[Fsfe-france-sci] Is there a molecular biology suite project?
From:
Pablo Ibanez
Subject:
[Fsfe-france-sci] Is there a molecular biology suite project?
Date:
Wed, 14 Jan 2009 15:14:27 +0000
Hello I am a post doc at the Dundee University, in Scottland, UK. I
mainly do genetics and I need to be able to see, edit and align .abi
files which are DNA sequence chromatogram files. In our lab, we used to
use vector NTI from invitrogen (http://www.invitrogen.com/site/us/en/home/LINNEA-Online-Guides/LINNEA-Communities/Vector-NTI-Community/Vector-NTI.html)
which was free for academy up to the last release... I never liked this
software but it was the one used in the lab, so... I usually use the
APE software (http://www.biology.utah.edu/jorgensen/wayned/ape/)
but it can't align multiple DNA sequence chromatograms, neither edit
them... I was wondering if there was a project that you know of aiming
at developping this kind of software or even a more complete one, since
I think that there is no really user friendly, complete and free (as in
freedom) such software. I have been talking with my boss and some
collegues, and there should be a possibility to look and hoppefully get
some funding for such project that could involve many different labs
(as far I know, most of the labs doing a bit of molecular biology would
be interested, and that means a lot of labs)!
Thanks a lot for your time. Looking forward reading you
-- Pablo Ibáñez Cruceyra, PhD Dr. Anton Gartner Lab Wellcome Trust Centre for Gene Regulation & _expression_ College of Life Sciences
The University of Dundee MSI/WTB/CIR Complex Dow Street Dundee DD1 5EH Scotland United Kingdom E-mail: address@hidden Office Phone: +44 (0) 1382-386 328
Lab Phone: +44 (0) 1382-386 326 Fax: +44 (0) 1382-388 072 Blog: http://pabloibanezcruceyra.blogspot.com/
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