Dear all,
I am simulating a system composed of around 60 polymers in a simulation box of length 20. In this system, many polymers cross the boundary and some of their monomers appear from the other side of the box. As a result, the bonds are stretched across the simulation box, which makes a mess in the visualization.
I wonder if there is a way to tell VMD not to show the bonds between the monomers (specially bonds that are stretched across the simulation box). I would be grateful if someone could kindly help me in this matter.