bug#75727: closed ([PATCH] gnu: Add r-sigfit.)

[GNU bug Tracking System]

Your message dated Wed, 22 Jan 2025 22:15:47 +0100
with message-id <87zfjia6t8.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-sigfit.
has caused the debbugs.gnu.org bug report #75727,
regarding [PATCH] gnu: Add r-sigfit.
to be marked as done.

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-- 
75727: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=75727
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-sigfit.
>
>
>
>
> Date: 
>
> Tue, 21 Jan 2025 13:23:32 +0100
>
>
>
>
> * gnu/packages/bioinformatics.scm (r-sigfit): New variable.
>
> Change-Id: I9d63975d3512cf8583e7ec22f450bb4963c9ff2f
> ---
>  gnu/packages/bioinformatics.scm | 36 +++++++++++++++++++++++++++++++++
>  1 file changed, 36 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index c98f6022bf..899606b195 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -1526,6 +1526,42 @@ (define-public r-saige
>  tests in large cohorts and biobanks (SAIGE-GENE+).")
>        (license license:gpl2+))))
>  
> +(define-public r-sigfit
> +  (package
> +    (name "r-sigfit")
> +    (version "2.2.0")
> +    (source
> +     (origin
> +       (method git-fetch)
> +       (uri (git-reference
> +             (url "https://github.com/kgori/sigfit";)
> +             (commit (string-append "v" version))))
> +       (file-name (git-file-name name version))
> +       (sha256
> +        (base32 "16r6m8p90rnb4hxl86fz3kbals3626232i8fj0zhhd23p89z3w4v"))))
> +    (properties `((upstream-name . "sigfit")))
> +    (build-system r-build-system)
> +    (native-inputs (list r-codetools))
> +    (propagated-inputs (list r-rcpp
> +                             r-rstan
> +                             r-rstantools
> +                             r-coda
> +                             r-clue
> +                             r-knitr
> +                             r-rmarkdown
> +                             r-bh
> +                             r-rcppeigen
> +                             r-stanheaders))
> +    (home-page "https://github.com/kgori/sigfit";)
> +    (synopsis "Flexible Bayesian inference of mutational signatures")
> +    (description
> +     "R package to estimate signatures of mutational processes and their
> +activities on mutation count data. Starting from a set of single-nucleotide
> +variants (SNVs), it allows both estimation of the exposure of samples to
> +predefined mutational signatures (including whether the signatures are
> +present at all), and identification of signatures de novo from the mutation 
> counts.")
> +    (license license:gpl3)))
> +
>  (define-public r-singlet
>    (let ((commit "765a6c45081807a1522f0e8983e2417822a36f36")
>          (revision "1"))
>
> base-commit: cf34ba66cf614358dfac925212d6a9074e318d80
> -- 
> 2.45.2
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-sigfit.
>
>
>
>
> Date: 
>
> Wed, 22 Jan 2025 22:15:47 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.12.7; emacs 29.4
>
>
>
>
> Thanks for the patch.  Applied with commit
> cc678d0e4d67073943e75053c5e450c4df700b42 to the master branch.
>
> -- 
> Ricardo
>
>
> --- End Message ---