bug#61921: closed ([PATCH] gnu: Add r-oscope.)

[GNU bug Tracking System]

Your message dated Fri, 03 Mar 2023 12:57:14 +0100
with message-id <87lekedp2v.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-oscope.
has caused the debbugs.gnu.org bug report #61921,
regarding [PATCH] gnu: Add r-oscope.
to be marked as done.

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-- 
61921: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=61921
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-oscope.
>
>
>
>
> Date: 
>
> Thu, 2 Mar 2023 16:48:03 +0000
>
>
>
>
> * gnu/packages/bioconductor.scm (r-oscope): New variable.
> ---
>  gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
>  1 file changed, 31 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 2bfca85bbc..c4fb44f7b2 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1702,6 +1702,37 @@ (define-public r-curatedtcgadata
>  across the entire multi-'omics experiment.")
>      (license license:artistic2.0)))
>  
> +(define-public r-oscope
> +  (let ((commit "32e0ea72236128731f35a60fb5abcde5b5d35433")
> +        (revision "1"))
> +    (package
> +      (name "r-oscope")
> +      (version (git-version "1.29.0" revision commit))
> +      (source (origin
> +                (method git-fetch)
> +                (uri (git-reference
> +                      (url "https://git.bioconductor.org/packages/Oscope";)
> +                      (commit commit)))
> +                (file-name (git-file-name name version))
> +                (sha256
> +                 (base32
> +                  "02929i7zd4fwdhxi0h2i7y3sn6v1k3srahn5a6v9wvihp5nmgcig"))))
> +      (properties `((upstream-name . "Oscope")))
> +      (build-system r-build-system)
> +      (propagated-inputs (list r-biocparallel r-cluster r-ebseq r-testthat))
> +      (home-page "https://git.bioconductor.org/packages/Oscope";)
> +      (synopsis
> +       "Oscillatory genes identifier in unsynchronized single cell RNA-seq")
> +      (description
> +       "Oscope is a oscillatory genes identifier in unsynchronized single cell 
> RNA-seq.
> +This statistical pipeline has been developed to identify and recover the
> +base cycle profiles of oscillating genes in an unsynchronized single cell
> +RNA-seq experiment.  The Oscope pipeline includes three modules: a sine model
> +module to search for candidate oscillator pairs; a K-medoids clustering module
> +to cluster candidate oscillators into groups; and an extended nearest insertion
> +module to recover the base cycle order for each oscillator group.")
> +      (license license:asl2.0))))
> +
>  (define-public r-parathyroidse
>    (package
>      (name "r-parathyroidse")
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-oscope.
>
>
>
>
> Date: 
>
> Fri, 03 Mar 2023 12:57:14 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.13; emacs 28.2
>
>
>
>
> Superseded by issue 61931.
>
> -- 
> Ricardo
>
>
> --- End Message ---