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bug#61854: closed ()

From: GNU bug Tracking System
Subject: bug#61854: closed ()
Date: Thu, 02 Mar 2023 12:29:02 +0000

Your message dated Thu, 02 Mar 2023 13:27:55 +0100
with message-id <87bklbfich.fsf@elephly.net>
and subject line Re: [bug#61854]
has caused the debbugs.gnu.org bug report #61854,
to be marked as done.

(If you believe you have received this mail in error, please contact

61854: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=61854
GNU Bug Tracking System
Contact help-debbugs@gnu.org with problems
--- Begin Message --- Subject: Date: Tue, 28 Feb 2023 01:10:30 +0100
Date: Tue, 28 Feb 2023 01:07:34 +0100
Subject: [PATCH] gnu: Add r-chromomap.

* gnu/packages/cran.scm (r-chromomap): New variable.
 gnu/packages/cran.scm | 36 ++++++++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index c80e98134a..5af741674c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -306,6 +306,42 @@ (define-public r-changepoint
     ;; Any version of the GPL.
     (license license:gpl3+)))
+;; The package sources include multiple non-mified js and v5.1.0 variant of 
+;; The d3.js file is also non-minified and the file mention the version and the
+;; home-page.
+(define-public r-chromomap
+  (package
+    (name "r-chromomap")
+    (version "4.1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "chromoMap" version))
+       (sha256
+        (base32 "1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43"))))
+    (properties `((upstream-name . "chromoMap")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-htmltools r-htmlwidgets))
+    (native-inputs (list r-knitr))
+    (home-page "https://cran.r-project.org/package=chromoMap";)
+    (synopsis "Interactive genomic visualization of biological data")
+    (description
+     "This package provides interactive, configurable and graphics 
+of the chromosome regions of any living organism allowing users to map 
+elements (like genes, SNPs etc.) on the chromosome plot.  It introduces a 
+plot viz. the \"chromosome heatmap\" that, in addition to mapping elements, can
+visualize the data associated with chromosome elements (like gene expression) 
+the form of heat colors.  Users can investigate the detailed information about 
+mappings (like gene names or total genes mapped on a location) or can view the
+magnified single or double stranded view of the chromosome at a location 
+each mapped element in sequential order.  The package provide multiple features
+like visualizing multiple sets, chromosome heat-maps, group annotations, adding
+hyperlinks, and labelling.  The plots can be saved as HTML documents that can 
+customized and shared easily.  In addition, you can include them in R Markdown 
+in R Shiny applications.")
+    (license (list license:gpl3
+                   license:isc )))) ;; for d3 bundled js
 (define-public r-collections
     (name "r-collections")

base-commit: 9ae4846c502b75867b83180bb65d422ff838e4e6

--- End Message ---
--- Begin Message --- Subject: Re: [bug#61854] Date: Thu, 02 Mar 2023 13:27:55 +0100 User-agent: mu4e 1.8.13; emacs 28.2
Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:

> Date: Tue, 28 Feb 2023 01:07:34 +0100
> Subject: [PATCH] gnu: Add r-chromomap.
> * gnu/packages/cran.scm (r-chromomap): New variable.

Applied with commit a7763e067d86908210758aab80d33e4f8b815b1c.


--- End Message ---

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