bug#61230: closed ([PATCH 1/2] gnu: Add python-pegasusio.)

[GNU bug Tracking System]

Your message dated Fri, 03 Feb 2023 00:25:56 +0100
with message-id <87mt5v8x9n.fsf@elephly.net>
and subject line [PATCH 1/2] gnu: Add python-pegasusio.
has caused the debbugs.gnu.org bug report #61230,
regarding [PATCH 1/2] gnu: Add python-pegasusio.
to be marked as done.

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-- 
61230: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=61230
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 1/2] gnu: Add python-pegasusio.
>
>
>
>
> Date: 
>
> Thu, 2 Feb 2023 17:00:22 +0100
>
>
>
>
> * gnu/packages/bioinformatics.scm (python-pegasusio): New variable.
> ---
>  gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
>  1 file changed, 30 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 714db27c16..6caf0e4cfa 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -1136,6 +1136,36 @@ (define-public python-htsget
>  servers supporting the protocol.")
>     (license license:asl2.0)))
>  
> +(define-public python-pegasusio
> +  (package
> +    (name "python-pegasusio")
> +    (version "0.7.1")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (pypi-uri "pegasusio" version))
> +              (sha256
> +               (base32
> +                "0gqygspdy398vjymdy6756jmk99s7fhwav9rivdx59kpqjcdxaz9"))))
> +    (build-system pyproject-build-system)
> +    (propagated-inputs (list python-anndata
> +                             python-docopt
> +                             python-h5py
> +                             python-importlib-metadata
> +                             python-loompy
> +                             python-natsort
> +                             python-numpy
> +                             python-pandas
> +                             python-pillow
> +                             python-scipy
> +                             python-zarr))
> +    (native-inputs (list python-cython python-setuptools-scm))
> +    (home-page "https://github.com/lilab-bcb/pegasusio";)
> +    (synopsis
> +     "Pegasusio is a Python package for reading or writing single-cell 
> genomics data")
> +    (description
> +     "Pegasusio is a Python package for reading or writing single-cell 
> genomics data.")
> +    (license license:bsd-3)))
> +
>  (define-public python-phylophlan
>    (package
>      (name "python-phylophlan")
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 1/2] gnu: Add python-pegasusio.
>
>
>
>
> Date: 
>
> Fri, 03 Feb 2023 00:25:56 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.13; emacs 28.2
>
>
>
>
> Applied, thank you!
>
> -- 
> Ricardo
>
>
> --- End Message ---