bug#56023: closed ([PATCH] gnu: Add r-alphabeta.)

[GNU bug Tracking System]

Your message dated Thu, 24 Nov 2022 15:20:40 +0100
with message-id <87h6yoo2lz.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-alphabeta.
has caused the debbugs.gnu.org bug report #56023,
regarding [PATCH] gnu: Add r-alphabeta.
to be marked as done.

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-- 
56023: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56023
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-alphabeta.
>
>
>
>
> Date: 
>
> Thu, 16 Jun 2022 18:35:02 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-alphabeta): New variable.
> ---
>  gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++++
>  1 file changed, 40 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..cd9923a946 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1987,6 +1987,46 @@ (define-public r-agimicrorna
>  objects are used so that other packages could be used as well.")
>      (license license:gpl3)))
>  
> +(define-public r-alphabeta
> +  (package
> +    (name "r-alphabeta")
> +    (version "1.10.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "AlphaBeta" version))
> +              (sha256
> +               (base32
> +                "1ikdrigma02gnl6ggrc89bjsiqmd7knpb9kw7nqyrdnv3qjd9iag"))))
> +    (properties `((upstream-name . "AlphaBeta")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-biocparallel
> +           r-data-table
> +           r-dplyr
> +           r-expm
> +           r-ggplot2
> +           r-gtools
> +           r-igraph
> +           r-optimx
> +           r-plotly
> +           r-stringr))
> +    (native-inputs (list r-knitr))
> +    (home-page "https://bioconductor.org/packages/AlphaBeta";)
> +    (synopsis
> +     "Estimating epimutation rates and spectra from DNA methylations in 
> plants")
> +    (description
> +     "The package @code{AlphaBeta} is a computational method for estimating
> +epimutation rates and spectra from high-throughput DNA methylation data in 
> plants.
> +The method has been specifically designed to:
> +@itemize
> +@item
> +analyze @emph{germline} epimutations in the context of multi-generational 
> mutation
> +accumulation lines;
> +@item
> +analyze @emph{somatic} epimutations in the context of plant development and 
> aging.
> +@end itemize")
> +    (license license:gpl3)))
> +
>  (define-public r-aneufinder
>    (package
>      (name "r-aneufinder")
>
> base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb
> -- 
> 2.36.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-alphabeta.
>
>
>
>
> Date: 
>
> Thu, 24 Nov 2022 15:20:40 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.9; emacs 28.1
>
>
>
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---