bug#56100: closed ([PATCH] gnu: Add r-arrayexpress.)

[GNU bug Tracking System]

Your message dated Thu, 24 Nov 2022 15:00:13 +0100
with message-id <87pmdco3k3.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-arrayexpress.
has caused the debbugs.gnu.org bug report #56100,
regarding [PATCH] gnu: Add r-arrayexpress.
to be marked as done.

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-- 
56100: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56100
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-arrayexpress.
>
>
>
>
> Date: 
>
> Mon, 20 Jun 2022 00:33:46 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-arrayexpress): New variable.
> ---
>  gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
>  1 file changed, 25 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..af486561e0 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -2029,6 +2029,31 @@ (define-public r-aneufinder
>  sequencing data.")
>      (license license:artistic2.0)))
>  
> +(define-public r-arrayexpress
> +  (package
> +    (name "r-arrayexpress")
> +    (version "1.56.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "ArrayExpress" version))
> +              (sha256
> +               (base32
> +                "0v2v7v0gim0bsg34ciplapz6mjih68yqhcgzdlhcyj2d6vrgiad5"))))
> +    (properties `((upstream-name . "ArrayExpress")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-biobase
> +           r-limma
> +           r-oligo
> +           r-xml))
> +    (home-page "https://bioconductor.org/packages/ArrayExpress";)
> +    (synopsis "Building R objects from ArrayExpress datasets")
> +    (description
> +     "This package offers the possibility to access the ArrayExpress repository
> +at @dfn{EBI} (European Bioinformatics Institute) and build Bioconductor data
> +structures: @code{ExpressionSet}, @code{AffyBatch}, @code{NChannelSet}.")
> +    (license license:artistic2.0)))
> +
>  (define-public r-biocversion
>    (package
>      (name "r-biocversion")
>
> base-commit: 73761d8049f483e6685c2c736872d0366e03238a
> -- 
> 2.36.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-arrayexpress.
>
>
>
>
> Date: 
>
> Thu, 24 Nov 2022 15:00:13 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.9; emacs 28.1
>
>
>
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---