bug#52123: closed ([PATCH] gnu: Add r-derfinderhelper.)

[GNU bug Tracking System]

Your message dated Fri, 26 Nov 2021 13:53:43 +0100
with message-id <87mtlr9iy0.fsf@gnu.org>
and subject line Re: bug#52123: [PATCH] gnu: Add r-derfinderhelper.
has caused the debbugs.gnu.org bug report #52123,
regarding [PATCH] gnu: Add r-derfinderhelper.
to be marked as done.

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52123: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=52123
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-derfinderhelper.
>
>
>
>
> Date: 
>
> Fri, 26 Nov 2021 13:41:54 +0100
>
>
>
>
> * gnu/packages/bioconductor.scm (r-derfinderhelper): New variable.
> ---
>  gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
>  1 file changed, 27 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index a66cc22fff..3dc8c61c4e 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1610,6 +1610,33 @@ (define-public r-delayedarray
>  @code{Matrix} objects, and ordinary arrays and data frames.")
>      (license license:artistic2.0)))
>  
> +(define-public r-derfinderhelper
> +  (package
> +    (name "r-derfinderhelper")
> +    (version "1.28.0")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (bioconductor-uri "derfinderHelper" version))
> +       (sha256
> +        (base32 "06x0wy2wzpngak1pnrj2p0xzlx1nbcz0hs3p9q5ic6ib2rgwrh35"))))
> +    (properties `((upstream-name . "derfinderHelper")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     `(("r-iranges" ,r-iranges)
> +       ("r-matrix" ,r-matrix)
> +       ("r-s4vectors" ,r-s4vectors)))
> +    (native-inputs
> +     `(("r-knitr" ,r-knitr)))
> +    (home-page "https://github.com/leekgroup/derfinderHelper";)
> +    (synopsis "Helper for derfinder")
> +    (description
> +     "This package speeds up the derfinder package when using multiple cores.
> +It is particularly useful when using BiocParallel and it helps reduce the time
> +spent loading the full derfinder package when running the F-statistics
> +calculation in parallel.")
> +    (license license:artistic2.0)))
> +
>  (define-public r-bluster
>    (package
>     (name "r-bluster")
> -- 
> 2.33.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: bug#52123: [PATCH] gnu: Add r-derfinderhelper.
>
>
>
>
> Date: 
>
> Fri, 26 Nov 2021 13:53:43 +0100
>
>
>
>
> User-agent: 
>
> Gnus/5.13 (Gnus v5.13) Emacs/27.2 (gnu/linux)
>
>
>
>
> Hi!
>
> zimoun <zimon.toutoune@gmail.com> skribis:
>
> > * gnu/packages/bioconductor.scm (r-derfinderhelper): New variable.
>
> Thanks for this wonderful package, pushed!
>
>   
> https://git.savannah.gnu.org/cgit/guix.git/commit/?id=128fd2ab594b25974a67fc7217107b8b83efda4d
>
> Ludo’.
>
> PS: Bonjour aux participant·es du Café Guix.  :-)
>
>
> --- End Message ---