bug#49477: closed ([core-updates] python-pyyaml fails on sanity-check)

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bug#49477: closed ([core-updates] python-pyyaml fails on sanity-check)

From:	GNU bug Tracking System
Subject:	bug#49477: closed ([core-updates] python-pyyaml fails on sanity-check)
Date:	Fri, 09 Jul 2021 23:59:01 +0000

Your message dated Sat, 10 Jul 2021 01:58:10 +0200
with message-id <20210710015804.3c5fe76a@tachikoma.lepiller.eu>
and subject line Re: bug#49477: [core-updates] python-pyyaml fails on 
sanity-check
has caused the debbugs.gnu.org bug report #49477,
regarding [core-updates] python-pyyaml fails on sanity-check
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs@gnu.org.)


-- 
49477: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=49477
GNU Bug Tracking System
Contact help-debbugs@gnu.org with problems

--- Begin Message --- Subject: [core-updates] python-pyyaml fails on sanity-check Date: Fri, 09 Jul 2021 03:55:30 +0000

Perhaps due to recent addition/changes for python sanity-check?

Here is the relevant portion of the log from running ./pre-inst-env guix build 
python-pyyaml on core-updates:

warning: build_py: byte-compiling is disabled, skipping.

running build_ext
building 'yaml._yaml' extension
creating build/temp.linux-x86_64-3.9
creating build/temp.linux-x86_64-3.9/yaml
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall 
-fno-semantic-interposition -fPIC 
-I/gnu/store/4nrih35yjsz2kwhr4pwxnkdzjmkgxxfq-python-3.9.5/include/python3.9 -c 
yaml/_yaml.c -o build/temp.linux-x86_64-3.9/yaml/_yaml.o
gcc: error: yaml/_yaml.c: No such file or directory
gcc: fatal error: no input files
compilation terminated.
Error compiling module, falling back to pure Python
phase `build' succeeded after 0.3 seconds
starting phase `install'
running "python setup.py" with command "install" and parameters 
("--prefix=/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1" 
"--no-compile" "--single-version-externally-managed" "--root=/")
running install
running build
running build_py
warning: build_py: byte-compiling is disabled, skipping.

running build_ext
building 'yaml._yaml' extension
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall 
-fno-semantic-interposition -fPIC 
-I/gnu/store/4nrih35yjsz2kwhr4pwxnkdzjmkgxxfq-python-3.9.5/include/python3.9 -c 
yaml/_yaml.c -o build/temp.linux-x86_64-3.9/yaml/_yaml.o
gcc: error: yaml/_yaml.c: No such file or directory
gcc: fatal error: no input files
compilation terminated.
Error compiling module, falling back to pure Python
running install_lib
creating /gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1
creating /gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib
creating 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9
creating 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages
creating 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/_yaml
copying build/lib.linux-x86_64-3.9/_yaml/__init__.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/_yaml
creating 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/__init__.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/composer.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/constructor.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/cyaml.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/dumper.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/emitter.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/error.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/events.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/loader.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/nodes.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/parser.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/reader.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/representer.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/resolver.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/scanner.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/serializer.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
copying build/lib.linux-x86_64-3.9/yaml/tokens.py -> 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml
warning: install_lib: byte-compiling is disabled, skipping.

running install_egg_info
running egg_info
writing lib3/PyYAML.egg-info/PKG-INFO
writing dependency_links to lib3/PyYAML.egg-info/dependency_links.txt
writing top-level names to lib3/PyYAML.egg-info/top_level.txt
warning: the 'license_file' option is deprecated, use 'license_files' instead
adding license file 'LICENSE' (matched pattern 'LICENSE')
reading manifest file 'lib3/PyYAML.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'lib3/PyYAML.egg-info/SOURCES.txt'
Copying lib3/PyYAML.egg-info to 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/PyYAML-5.4.1-py3.9.egg-info
running install_scripts
Listing '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1'...
Listing '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib'...
Listing 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9'...
Listing 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages'...
Listing 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/PyYAML-5.4.1-py3.9.egg-info'...
Listing 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/_yaml'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/_yaml/__init__.py'...
Listing 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/__init__.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/composer.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/constructor.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/cyaml.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/dumper.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/emitter.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/error.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/events.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/loader.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/nodes.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/parser.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/reader.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/representer.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/resolver.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/scanner.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/serializer.py'...
Compiling 
'/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml/tokens.py'...
phase `install' succeeded after 0.5 seconds
starting phase `add-install-to-pythonpath'
phase `add-install-to-pythonpath' succeeded after 0.0 seconds
starting phase `add-install-to-path'
phase `add-install-to-path' succeeded after 0.0 seconds
starting phase `wrap'
find-files: 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/bin: No such 
file or directory
find-files: 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/sbin: No such 
file or directory
phase `wrap' succeeded after 0.0 seconds
starting phase `check'
running "python setup.py" with command "test" and parameters ()
running test
running build_py
warning: build_py: byte-compiling is disabled, skipping.

running build_ext
building 'yaml._yaml' extension
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall 
-fno-semantic-interposition -fPIC 
-I/gnu/store/4nrih35yjsz2kwhr4pwxnkdzjmkgxxfq-python-3.9.5/include/python3.9 -c 
yaml/_yaml.c -o build/temp.linux-x86_64-3.9/yaml/_yaml.o
gcc: error: yaml/_yaml.c: No such file or directory
gcc: fatal error: no input files
compilation terminated.
Error compiling module, falling back to pure Python
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
===========================================================================
TESTS: 1288
phase `check' succeeded after 4.3 seconds
starting phase `sanity-check'
validating 'PyYAML' 
/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages
...checking requirements: OK
...trying to load module _yaml: ERROR:
Traceback (most recent call last):
  File "/gnu/store/slim8x2ppjhici2iiabmyvg9lxyikiwy-sanity-check.py", line 69, 
in <module>
    importlib.import_module(name)
  File 
"/gnu/store/4nrih35yjsz2kwhr4pwxnkdzjmkgxxfq-python-3.9.5/lib/python3.9/importlib/__init__.py",
 line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
  File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 855, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File 
"/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/_yaml/__init__.py",
 line 14, in <module>
    raise exc("No module named '_yaml'")
ModuleNotFoundError: No module named '_yaml'
...trying to load module yaml: OK
error: in phase 'sanity-check': uncaught exception:
%exception #<&invoke-error program: "python" arguments: 
("/gnu/store/slim8x2ppjhici2iiabmyvg9lxyikiwy-sanity-check.py" 
"/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages")
 exit-status: 1 term-signal: #f stop-signal: #f>
phase `sanity-check' failed after 0.2 seconds
command "python" "/gnu/store/slim8x2ppjhici2iiabmyvg9lxyikiwy-sanity-check.py" 
"/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages"
 failed with status 1
builder for 
`/gnu/store/m9vvvh5qpkrcd0hra3dpri1yqns9m36w-python-pyyaml-5.4.1.drv' failed 
with exit code 1
build of /gnu/store/m9vvvh5qpkrcd0hra3dpri1yqns9m36w-python-pyyaml-5.4.1.drv 
failed
View build log at 
'/var/log/guix/drvs/m9/vvvh5qpkrcd0hra3dpri1yqns9m36w-python-pyyaml-5.4.1.drv.bz2'.
guix build: error: build of 
`/gnu/store/m9vvvh5qpkrcd0hra3dpri1yqns9m36w-python-pyyaml-5.4.1.drv' failed

--- End Message ---

--- Begin Message --- Subject: Re: bug#49477: [core-updates] python-pyyaml fails on sanity-check Date: Sat, 10 Jul 2021 01:58:10 +0200
Pushed a fix as 80506bc6daa1d106e6f836f741eedfa92ad4e4b6 to
core-updates, thanks!
--- End Message ---

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