bug#36795: closed ([PATCH 06/11] gnu: Add r-consensusclusterplus.)

[GNU bug Tracking System]

Your message dated Fri, 21 Feb 2020 18:07:33 +0100
with message-id <CAJ3okZ2GnkOKAPNwz8FwmRbZ+W+pYHiwB=address@hidden>
and subject line patches merged
has caused the debbugs.gnu.org bug report #36797,
regarding [PATCH 06/11] gnu: Add r-consensusclusterplus.
to be marked as done.

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-- 
36797: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 06/11] gnu: Add r-consensusclusterplus.
>
>
>
>
> Date: 
>
> Wed, 24 Jul 2019 20:21:59 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-consensusclusterplus): New variable.
> ---
>  gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
>  1 file changed, 25 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index d79ff729fc..d5bd512972 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -4827,6 +4827,31 @@ and to both short and long sequence reads.")
>        "Provides utilities for flow cytometry data.")
>      (license license:artistic2.0)))
>  
> +(define-public r-consensusclusterplus
> +  (package
> +    (name "r-consensusclusterplus")
> +    (version "1.48.0")
> +    (source
> +      (origin
> +        (method url-fetch)
> +        (uri (bioconductor-uri "ConsensusClusterPlus" version))
> +        (sha256
> +          (base32
> +            "1mlcm3wq5n8s0gxs35j0ph9576fhbrbrrsj2xy84fy20prcfs4w8"))))
> +    (properties
> +      `((upstream-name . "ConsensusClusterPlus")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +      `(("r-all" ,r-all)
> +        ("r-biobase" ,r-biobase)
> +        ("r-cluster" ,r-cluster)))
> +    (home-page
> +      "https://bioconductor.org/packages/ConsensusClusterPlus";)
> +    (synopsis "Clustering algorithm")
> +    (description
> +      "Algorithm for determining cluster count and membership by stability 
> evidence in unsupervised analysis.")
> +    (license license:gpl2)))
> +
>  (define-public r-flowcore
>    (package
>      (name "r-flowcore")
> -- 
> 2.21.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> patches merged
>
>
>
>
> Date: 
>
> Fri, 21 Feb 2020 18:07:33 +0100
>
>
>
>
> Dear,
>
> All the patches are merged now; except r-flowpeaks. Because this
> package use Artistic1.0 which is not enough clear to be considered
> "free" [1,2] (GNU's point of view [3]) and upstream are not
> responsive, let clean the bug tracker. :-)
>
> [1] https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797#16
> [2] https://lists.gnu.org/archive/html/guix-devel/2019-12/msg00286.html
> [3] https://www.gnu.org/licenses/license-list.en.html#ArtisticLicense
>
> All the best,
> simon
>
>
> --- End Message ---