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Re: Compiling Osirix with GnuStep


From: Afsaneh
Subject: Re: Compiling Osirix with GnuStep
Date: Thu, 1 Mar 2012 11:32:04 -0800 (PST)

Hello Gerard,
I wonder if you were able to run Osirix on Linux?

Many thanks,
Afsaneh


delafond wrote:
> 
> Hi all
> 
> I am a Doctor, and I am trying to get Osirix
> (http://www.osirix-viewer.com/), 
> a free medical imaging editor with Gnustep.
> 
> I installed all gnustep software, I compiled pbxbuild, and tried to
> execute it 
> as said in this page :
> http://osirix.svn.sourceforge.net/viewvc/osirix/Documentation/Developers 
> Guide/index.html
> 
> $ pbxbuild OsiriX.xcodeproj/   
> 
> First, I get numerous messages like this:                          
> 2009-10-17 09:36:56.879 pbxbuild[22110] Warning: Unknown reference type 
> 'PBXVariantGroup' in PBXGroup!                                                
>        
> 2009-10-17 09:36:56.886 pbxbuild[22110] Warning: Unknown reference type 
> 'PBXVariantGroup' in PBXGroup!      
> 
> Then this:
> 2009-10-17 09:36:57.230 pbxbuild[22110] Found Target OsiriX                   
>                                                                               
>  
> 2009-10-17 09:36:57.267 pbxbuild[22110] Found Target DCM Framework            
>                                                                               
>  
> 2009-10-17 09:36:57.291 pbxbuild[22110] Found Target DCM StaticLibrary        
>                                                                               
>  
> 2009-10-17 09:36:57.291 pbxbuild[22110] Don't know how to handle target
> type: 
> 'PBXAggregateTarget', skipping...                                             
>  
> 2009-10-17 09:36:57.292 pbxbuild[22110] Don't know how to handle target
> type: 
> 'PBXAggregateTarget', skipping...                                             
>  
> 2009-10-17 09:36:57.330 pbxbuild[22110] Found Target Decompress               
>                                                                               
>  
> 2009-10-17 09:36:57.331 pbxbuild[22110] Found Target DICOMPrint               
>                                                                               
>  
> 2009-10-17 09:36:57.331 pbxbuild[22110] Found Target 32-bit shell             
>                                                                               
>  
> 2009-10-17 09:36:57.332 pbxbuild[22110] Don't know how to handle target
> type: 
> 'PBXAggregateTarget', skipping...                                             
>  
> 2009-10-17 09:36:57.332 pbxbuild[22110] Found Target OsiriX Headers           
>                                                                               
>  
> 2009-10-17 09:36:57.333 pbxbuild[22110] Removing old build dir...             
>                                                                               
>  
> This is gnustep-make 2.0.8. Type 'make print-gnustep-make-help' for help.     
>                                                                               
>  
> Making all in OsiriX.app...                                                   
>                                                                               
>  
> mkdir -p ./obj/./ITK180                                                       
>               
> 
> Then this:
> sh /mnt/sda2/osirix/osirix/pbxbuild/scripts/script_26928318.sh                
>                                                                               
>  
> /mnt/sda2/osirix/osirix/pbxbuild/scripts/script_26928318.sh: line 17:
> syntax 
> error: unexpected end of file                                                 
>   
> make[1]: [before-all] Erreur 2 (ignorée)                                      
>                                                                               
>  
> sh /mnt/sda2/osirix/osirix/pbxbuild/scripts/script_135614455.sh               
>                                                                               
>  
> 
> 
> Then this:
> /mnt/sda2/osirix/osirix/pbxbuild/scripts/script_135614455.sh: line 41: `      
>   
> open(FH, "$INFO") or die "$0: $INFO: $!";'                                   
> make[1]: [before-all] Erreur 2 (ignorée)                                      
>                                                                               
>  
> Making all for app OsiriX...                                                  
>                                                                               
>  
>  Creating OsiriX.app/....                                                     
>                                                                               
>  
>  Compiling file NIfTI_Library/nifti1_io.c ...                                 
>                                                                               
>  
> NIfTI_Library/nifti1_io.c:295: attention : deprecated conversion from
> string 
> constant to ‘char*’                                                           
>   
> NIfTI_Library/nifti1_io.c:295: attention : deprecated conversion from
> string 
> constant to ‘char*’                                                           
>   
> 
> Then this:
> NIfTI_Library/nifti1_io.c: In function ‘int is_nifti_file(const char*)’:      
>                                                                               
>  
> NIfTI_Library/nifti1_io.c:2874: attention : comparaison entre des
> expressions 
> entières signée et non signée                                                 
>  
> NIfTI_Library/nifti1_io.c: In function ‘nifti_image* 
> nifti_convert_nhdr2nim(nifti_1_header, const char*)’:                         
>                           
> NIfTI_Library/nifti1_io.c:3248: attention : comparaison entre des
> expressions 
> entières signée et non signée                                                 
>  
> NIfTI_Library/nifti1_io.c: In function ‘nifti_image*
> nifti_image_read(const 
> char*, int)’:                                                                 
>    
> NIfTI_Library/nifti1_io.c:3606: attention : comparaison entre des
> expressions 
> entières signée et non signée                                                 
>  
> g++: apps: fichier d'entrée d'édition de liens n'est pas utilisé parce 
> l'édition de lien n'a pas été faite                                           
>         
> g++: Panes/OSIHotKeysPreferencePane/build: fichier d'entrée d'édition de
> liens 
> n'est pas utilisé parce l'édition de lien n'a pas été faite                   
> g++: Panes: fichier d'entrée d'édition de liens n'est pas utilisé parce 
> l'édition de lien n'a pas été faite                                           
>        
> 
> Then this:
>  Compiling file Papyrus3/DicomDir/DicomDirDataSetWrite.c ...                  
>                                                                               
>  
> Dans le fichier inclus à partir de ././Papyrus3/Papyrus3.h:72,                
>                                                                               
>  
>           à partir de Papyrus3/DicomDir/DicomDir.h:24,                        
>                                                                               
>  
>           à partir de Papyrus3/DicomDir/DicomDirDataSetWrite.c:15:            
>                                                                               
>  
> ././Papyrus3/PapyPrivFunctionDef3.h:13:33: attention :
> libkern/OSByteOrder.h : 
> Aucun fichier ou dossier de ce type                                           
> In file included from ././Papyrus3/Papyrus3.h:72,                             
>                                                                               
>  
> 
> (looks like some file is missing)
> 
> I found this header should be the same as the one in Linux source file.
> So, il 
> replaced
> #include <libkern/OSByteOrder.h>
> by
> #include "/usr/src/linux-2.6.29.6-
> desktop586-2mnb/arch/x86/include/asm/byteorder.h"
> 
> The error message stops, but the result is as bad :
> ././Papyrus3/PapyPrivFunctionDef3.h: In function ‘long long unsigned int 
> UInt64ToHost(PapyShort, unsigned char*)’:
> ././Papyrus3/PapyPrivFunctionDef3.h:123: erreur: ‘OSSwapLittleToHostInt64’
> was 
> not declared in this scope
> ././Papyrus3/PapyPrivFunctionDef3.h:125: erreur: ‘OSSwapBigToHostInt64’
> was 
> not declared in this scope
> 
> 
> then
> make[2]: *** [obj/./Papyrus3/DicomDir/DicomDirDataSetWrite.c.o] Erreur 1
> make[1]: *** [OsiriX.all.app.variables] Erreur 2
> make: *** [internal-all] Erreur 2
> 
> The availability of this program on Linux should be very important to let 
> medical establishments switch to free software.
> 
> I would appreciate any help which could make Osirix work on Linux
> 
> Many thanks
> 
> Gerard
> 
> 
> _______________________________________________
> Discuss-gnustep mailing list
> address@hidden
> http://lists.gnu.org/mailman/listinfo/discuss-gnustep
> 
> 

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