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bug#31721: “generate-jar-indices” phase fails on many packages
From: |
Ricardo Wurmus |
Subject: |
bug#31721: “generate-jar-indices” phase fails on many packages |
Date: |
Tue, 5 Jun 2018 13:15:41 +0200 |
User-agent: |
mu4e 1.0; emacs 26.1 |
The “generate-jar-indices” phase fails on a couple of packages, such as
java-picard (all variants)
dropseq-tools
java-cisd-jhdf5
The errors are either about duplicates as in java-picard-2.10.3:
duplicate entry: htsjdk/samtools/AbstractBAMFileIndex$1.class
or about missing files as in dropseq-tools:
java.io.FileNotFoundException:
/gnu/store/q76y0ximcziplgfpbn26kbw4h3s14f33-dropseq-tools-1.13/share/java/lib/biojava-alignment.jar
I have removed the phase in these packages, but that’s not ideal.
Can we make this phase more robust?
--
Ricardo
- bug#31721: “generate-jar-indices” phase fails on many packages,
Ricardo Wurmus <=