* The version number: 20161123
* The bugid: swap_activity_file-r
* The command line being run
parallel -j -8 --resume-failed --joblog prepare_bams_job.log --memfree 20G --noswap --workdir `pwd` --env foo foo ::: $FILES ::: $ALLELES
where foo is a bash function that invokes and aligner script.
* The files being read (put the files on a webserver if they are big)
Sorry, the are on the order of several gigabytes.