Re: [Myexperiment-discuss] non-taverna workflows

[Paul Allen]

I am happy to hear about a roadmap that involves support for Kepler workflows in MyExperiment. There are several efforts already underway or in the planning stages for a web front-end for dealing with Kepler workflows. I think that Hydrant (https://www.hpc.jcu.edu.au/hydrant/) is the only one that is public.

I hope that those of us working on Kepler-based web sites can find ways to collaborate and leverage each other's efforts instead of directly competing.

Antoon Goderis wrote:

Hi Jan,

On Wed, 23 Jul 2008, Jan Aerts wrote:

  

All,

Is it possible/advised to put non-taverna workflows on MyExperiment?
    

You can do it by uploading them as a File. You get all the usual goodies
but they don't show up under the workflows tab. At the moment workflows,
when uploaded, have to parse as a valid Taverna workflow, because an
image is rendered and documentation extracted based on the Taverna format.

It's definitely within the remit of the project to have different types
of workflow on myExperiment - so the current situation is temporary and a
matter of resource. Explicit support for Triana workflows and Kepler
workflows (two other environments) are next on the to do list, for
instance.

Antoon

 > Michael Barton
has blogged about using rakefiles (the ruby equivalent > of makefiles) on
  

http://www.bioinformaticszen.com/2008/05/organised-bioinformatics-experiments/.
I have used that approach a lot and believe it is a very good
alternative for doing scientific workflows where it is impossible or
not advisable to use webservices for the steps of the process.

Michael has put one of his workflows online on github:
http://github.com/michaelbarton/cost_in_evolution

Or is MyExperiment.org too much tied in with Taverna?

jan. (saaientist.blogspot.com)


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