\version "2.11.39"
#(ly:set-option 'point-and-click #f)

\header { title="Cue notes wrong in transposed staves"}
\layout{ 
  ragged-right = ##t
}

vI = \relative c'' { \key f \major c1| \cueDuring #"vII" #UP { R1 } | c1 | c | }
\addQuote vI \vI

% Written in concert pitch. There should only be c'' in the whole piece.
vII = \relative c'' { \key f \major c1 | c | \cueDuring #"vI" #DOWN { R1 } | c |  }
\addQuote vII \vII

\score {
  <<
    \context Staff = "vISt" << \vI  >>
    % transpose to written pitch: The cue notes are NOT properly transposed, although they are part of vII...
    \context Staff = "vIIStwrittenPitch" \with { instrumentName = \markup \column {"Instr. in F" "(written p.)"}  } << \transpose f c \vII >>
    % Shown in concert pitch. Everything is all right
    \context Staff = "vIIStconcertPitch" \with { instrumentName = \markup \column{"Same instr." "(concert" "pitch)"} } << \vII >>
  >>
}