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Re: [igraph] calculate the degree of weighted network
From: |
Tamas Nepusz |
Subject: |
Re: [igraph] calculate the degree of weighted network |
Date: |
Sat, 14 Feb 2015 21:08:13 +0100 |
User-agent: |
Mutt/1.5.23 (2014-03-12) |
Hi,
Use strength(), not degree().
--
T.
On 02/13, Qunawei Zhang wrote:
> Hello:
>
> I have a weighted network. It's format is shown below. I imported the
> network as a weighted network and calculated the degrees. But I found the
> degrees are not based on the weights (I.e., the number of interaction
> partners instead).
> I used the following codes in R. Is there anything wrong? thanks
>
> read.graph(file=file_network_MR,format="ncol",weights="yes")
>
> de_MR=degree(network_MR)
>
>
>
> #the network file
>
> A1BG ANXA7 16530.90
> A1BG TK1 13310.48
> A1BG SNCA 11476.88
> A1BG CDKN1A 9057.41
> A1BG GRB7 8774.95
> A1CF SYNCRIP 14477.77
> A1CF APOBEC1 315.91
>
> Thanks
>
> Best
> Quanwei
>
>
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--
T.