Re: octave install

[Tatsuro MATSUOKA]

--- On Wed, 2014/4/9, address@hidden <address@hidden> wrote:

> On Wednesday, April 09, 2014 05:57 PM, Tatsuro MATSUOKA wrote:
> > --- On Wed, 2014/4/9, Tatsuro MATSUOKA <address@hidden> o
> >> Sorry my build was lack of lighdf
> >>
> >
> > I checked config.log
> >
> > configure:15393: gcc -c -g -O2 -pthread    conftest.c >&5
> > In file included from /usr/include/hdf5.h:24:0,
> >                   from conftest.c:90:
> > /usr/include/H5public.h:57:20: fatal error: mpi.h: No such file or directory
> > compilation terminated.
> > configure:15393: $? = 1
> >
> > The lack of mpi.h from openmpi is the origin of misdectioning 
> > libhdf5openmpi-dev.
> 
> Ah, thanks!
> 
> >
> > According to the synaptic package manager, openmpi on Ubuntu 12.04 LTS does 
> > not have dev package.  The version of openmpi bundled with gmsh is 1.4.3.  
> > I have build openmpi-1.4.3 from source and installed to /usr/local.
> 
> Strange! Ubuntu quantal does have libopenmpi-dev and mpi.h lives in 
> /usr/include/mpi (a symlink created by update-alternatives). Therefore 
> passing CPPFLAGS=-I/usr/include/mpi to "configure" should have it 
> detected. Or maybe simply use setting CXX=mpic++ will be good enough.
> 
> >
> > The configure of octave-3.8.1 successfully detected hdf5.
> > Now I am executing "make".
> >
> > After "make" finished I will report the results.
> 
> I'll wait for your results. Building octave takes too long a time on my 
> rather old box. :-(
> 
> Regards,
> ST
> -- 


> Strange! Ubuntu quantal does have libopenmpi-dev and mpi.h lives in 
> /usr/include/mpi (a symlink created by update-alternatives). 

Thanks.  I will search them.

> I'll wait for your results. Building octave takes too long a time on my 
> rather old box. :-(

Unfortunately build was unsuccessful at compling __fltk_uigetfile__.cc

/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..  
-pthread -I/usr/include/cairo -I/usr/include/glib-2.0 
-I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 
-I/usr/include/freetype2 -I/usr/include/libpng12   -fstack-protector 
--param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security 
-DCP936  -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-D_THREAD_SAFE -D_REENTRANT -I/usr/include/freetype2   
-I../liboctave/cruft/misc -I../liboctave/array -I../liboctave/numeric 
-I../liboctave/numeric -I../liboctave/operators -I../liboctave/operators 
-I../liboctave/system -I../liboctave/util -I./octave-value -I./operators 
-Iparse-tree -I./parse-tree -Icorefcn -I./corefcn -I../libgnu -I../libgnu  
-mieee-fp -Wall -W -Wshadow -Wold-style-cast -Wformat -Wpointer-arith 
-Wwrite-strings -Wcast-align -Wcast-qual -g -O2 -pthread -MT 
dldfcn/dldfcn___fltk_uigetfile___la-__fltk_uigetfile__.lo -MD -MP -MF
 dldfcn/.deps/dldfcn___fltk_uigetfile___la-__fltk_uigetfile__.Tpo -c -o 
dldfcn/dldfcn___fltk_uigetfile___la-__fltk_uigetfile__.lo `test -f 
'dldfcn/__fltk_uigetfile__.cc' || echo './'`dldfcn/__fltk_uigetfile__.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -pthread -I/usr/include/cairo 
-I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include 
-I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 
-fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security 
-Werror=format-security -DCP936 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D_REENTRANT -I/usr/include/freetype2 
-I../liboctave/cruft/misc -I../liboctave/array -I../liboctave/numeric 
-I../liboctave/numeric -I../liboctave/operators -I../liboctave/operators 
-I../liboctave/system -I../liboctave/util -I./octave-value -I./operators 
-Iparse-tree -I./parse-tree -Icorefcn -I./corefcn -I../libgnu -I../libgnu 
-mieee-fp -Wall -W -Wshadow -Wold-style-cast -Wformat -Wpointer-arith 
-Wwrite-strings -Wcast-align -Wcast-qual -g -O2 -pthread -MT 
dldfcn/dldfcn___fltk_uigetfile___la-__fltk_uigetfile__.lo -MD -MP -MF
 dldfcn/.deps/dldfcn___fltk_uigetfile___la-__fltk_uigetfile__.Tpo -c 
dldfcn/__fltk_uigetfile__.cc  -fPIC -DPIC -o 
dldfcn/.libs/dldfcn___fltk_uigetfile___la-__fltk_uigetfile__.o
In file included from /usr/local/include/mpi.h:1886:0,
                 from /usr/include/H5public.h:57,
                 from /usr/include/hdf5.h:24,
                 from corefcn/oct-hdf5.h:27,
                 from ./octave-value/ov.h:42,
                 from corefcn/oct-obj.h:34,
                 from ./octave-value/ov-fcn.h:32,
                 from ./octave-value/ov-builtin.h:28,
                 from corefcn/defun-int.h:28,
                 from corefcn/defun-dld.h:30,
                 from dldfcn/__fltk_uigetfile__.cc:44:
/usr/local/include/openmpi/ompi/mpi/cxx/mpicxx.h:186:9: error: expected 
identifier before 'int'
/usr/local/include/openmpi/ompi/mpi/cxx/mpicxx.h:186:9: error: multiple types 
in one declaration
In file included from /usr/local/include/openmpi/ompi/mpi/cxx/mpicxx.h:231:0,
                 from /usr/local/include/mpi.h:1886,
                 from /usr/include/H5public.h:57,
                 from /usr/include/hdf5.h:24,
                 from corefcn/oct-hdf5.h:27,
                 from ./octave-value/ov.h:42,
                 from corefcn/oct-obj.h:34,
                 from ./octave-value/ov-fcn.h:32,
                 from ./octave-value/ov-builtin.h:28,
                 from corefcn/defun-int.h:28,
                 from corefcn/defun-dld.h:30,
                 from dldfcn/__fltk_uigetfile__.cc:44:
/usr/local/include/openmpi/ompi/mpi/cxx/status.h:22:7: error: expected 
identifier before 'int'
/usr/local/include/openmpi/ompi/mpi/cxx/status.h:22:14: error: expected 
unqualified-id before '{' token
dldfcn/__fltk_uigetfile__.cc:142:1: error: expected '}' at end of input
make[3]: *** [dldfcn/dldfcn___fltk_uigetfile___la-__fltk_uigetfile__.lo] Error 1
make[3]: Leaving directory 
`/home/tatsuromatsuoka/work/octave/octave-3.8.1/libinterp'
make[2]: *** [all] Error 2
make[2]: Leaving directory 
`/home/tatsuromatsuoka/work/octave/octave-3.8.1/libinterp'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/tatsuromatsuoka/work/octave/octave-3.8.1'
make: *** [all] Error 2

I watched /usr/local/include/openmpi/ompi/mpi/cxx/status.h but I could not find 
the origin of errors.

Regards
Tatsuro