[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
[PATCH 13/22] gnu: Add mcl.
From: |
Ben Woodcroft |
Subject: |
[PATCH 13/22] gnu: Add mcl. |
Date: |
Wed, 27 Jul 2016 22:54:14 +1000 |
* gnu/packages/machine-learning.scm (mcl): New variable.
---
gnu/packages/machine-learning.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/machine-learning.scm
b/gnu/packages/machine-learning.scm
index 2ccf0f2..3f2e502 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -33,6 +33,7 @@
#:use-module (gnu packages dejagnu)
#:use-module (gnu packages gcc)
#:use-module (gnu packages maths)
+ #:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
#:use-module (gnu packages statistics)
@@ -200,6 +201,32 @@ Markov Models} (HMM) and algorithms: discrete, continous
emissions, basic
training, HMM clustering, HMM mixtures.")
(license license:lgpl2.0+))))
+(define-public mcl
+ (package
+ (name "mcl")
+ (version "14.137")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://micans.org/mcl/src/mcl-"
+ (string-replace-substring version "." "-")
+ ".tar.gz"))
+ (sha256
+ (base32
+ "15xlax3z31lsn62vlg94hkm75nm40q4679amnfg13jm8m2bnhy5m"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:configure-flags (list "--enable-blast")))
+ (inputs
+ `(("perl" ,perl)))
+ (home-page "http://micans.org/mcl/")
+ (synopsis "Clustering algorithm for graphs")
+ (description
+ "The MCL algorithm is short for the @dfn{Markov Cluster Algorithm}, a
+fast and scalable unsupervised cluster algorithm for graphs (also known as
+networks) based on simulation of (stochastic) flow in graphs.")
+ (license license:gpl3)))
+
(define-public randomjungle
(package
(name "randomjungle")
--
2.9.1
- [PATCH 03/22] gnu: Add perl-parse-yapp., (continued)
- [PATCH 03/22] gnu: Add perl-parse-yapp., Ben Woodcroft, 2016/07/27
- [PATCH 04/22] gnu: Add perl-graph., Ben Woodcroft, 2016/07/27
- [PATCH 05/22] gnu: Add perl-graph-readwrite., Ben Woodcroft, 2016/07/27
- [PATCH 06/22] gnu: Add perl-log-log4perl., Ben Woodcroft, 2016/07/27
- [PATCH 08/22] gnu: Add perl-file-path., Ben Woodcroft, 2016/07/27
- [PATCH 07/22] gnu: Add perl-file-slurper., Ben Woodcroft, 2016/07/27
- [PATCH 09/22] gnu: Add perl-file-grep., Ben Woodcroft, 2016/07/27
- [PATCH 10/22] gnu: Add perl-array-utils., Ben Woodcroft, 2016/07/27
- [PATCH 11/22] gnu: Add perl-test-files., Ben Woodcroft, 2016/07/27
- [PATCH 12/22] gnu: Add perl-env-path., Ben Woodcroft, 2016/07/27
- [PATCH 13/22] gnu: Add mcl.,
Ben Woodcroft <=
- [PATCH 14/22] gnu: Add bpp-core., Ben Woodcroft, 2016/07/27
- [PATCH 15/22] gnu: Add bpp-seq., Ben Woodcroft, 2016/07/27
- [PATCH 16/22] gnu: Add bpp-phyl., Ben Woodcroft, 2016/07/27
- [PATCH 17/22] gnu: Add bpp-popgen., Ben Woodcroft, 2016/07/27
- [PATCH 18/22] gnu: Add bppsuite., Ben Woodcroft, 2016/07/27
- [PATCH 19/22] gnu: Add exonerate., Ben Woodcroft, 2016/07/27
- [PATCH 20/22] gnu: Add prank., Ben Woodcroft, 2016/07/27
- [PATCH 21/22] gnu: Add raxml., Ben Woodcroft, 2016/07/27