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[PATCH] Add r-seqlogo.
From: |
Ricardo Wurmus |
Subject: |
[PATCH] Add r-seqlogo. |
Date: |
Wed, 6 Apr 2016 17:28:49 +0200 |
>From 1a23897008d3c0fc86459d111ad3847b404051b9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <address@hidden>
Date: Fri, 18 Mar 2016 12:15:24 +0100
Subject: [PATCH] gnu: Add r-seqlogo.
* gnu/packages/bioinformatics.scm (r-seqlogo): New variable.
---
gnu/packages/bioinformatics.scm | 21 +++++++++++++++++++++
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c7f50b9..b119fd2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4775,6 +4775,27 @@ annotations for the genome of the model fruit fly
Drosophila melanogaster.")
annotations for the genome of the model mouse Mus musculus.")
(license license:artistic2.0)))
+(define-public r-seqlogo
+ (package
+ (name "r-seqlogo")
+ (version "1.36.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "seqLogo" version))
+ (sha256
+ (base32
+ "0kn1a1nf2j4v9c09vjkz9bmxlln7yhg87bnyrdsxy1m55x56rn5k"))))
+ (properties `((upstream-name . "seqLogo")))
+ (build-system r-build-system)
+ (home-page "http://bioconductor.org/packages/seqLogo")
+ (synopsis "Sequence logos for DNA sequence alignments")
+ (description
+ "seqLogo takes the position weight matrix of a DNA sequence motif and
+plots the corresponding sequence logo as introduced by Schneider and
+Stephens (1990).")
+ (license license:lgpl2.0+)))
+
(define-public r-qtl
(package
(name "r-qtl")
--
2.1.0
- [PATCH] Add r-seqlogo.,
Ricardo Wurmus <=