>From a540e28db46d7914e66f448ad49850f4365902cb Mon Sep 17 00:00:00 2001
From: Ben Woodcroft <address@hidden>
Date: Tue, 10 Nov 2015 22:10:39 +1000
Subject: [PATCH] gnu: mafft: Update to 7.245.

* gnu/packages/bioinformatics.scm (mafft): Update to 7.245.
Fix inputs.
---
 gnu/packages/bioinformatics.scm | 12 ++++++++----
 1 file changed, 8 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f13e405..011ce78 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -40,6 +40,7 @@
   #:use-module (gnu packages compression)
   #:use-module (gnu packages cpio)
   #:use-module (gnu packages file)
+  #:use-module (gnu packages gawk)
   #:use-module (gnu packages java)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages machine-learning)
@@ -1688,7 +1689,7 @@ sequencing tag position and orientation.")
 (define-public mafft
   (package
     (name "mafft")
-    (version "7.221")
+    (version "7.245")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1697,7 +1698,7 @@ sequencing tag position and orientation.")
               (file-name (string-append name "-" version ".tgz"))
               (sha256
                (base32
-                "0xi7klbsgi049vsrk6jiwh9wfj3b770gz3c8c7zwij448v0dr73d"))))
+                "0m1l7gdrmfxjw54d3a0g18w6rwqrra9w9zvxix7dcddw6d1qyir2"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ; no automated tests, though there are tests in the read me
@@ -1731,8 +1732,11 @@ sequencing tag position and orientation.")
 \\$\\(DESTDIR\\)\\$\\(LIBDIR\\)") "#"))
             #t))
          (delete 'configure))))
-    (inputs
-     `(("perl" ,perl)))
+    (propagated-inputs
+     `(("perl" ,perl)
+       ("gawk" ,gawk)
+       ("coreutils" ,coreutils)
+       ("grep" ,grep)))
     (home-page "http://mafft.cbrc.jp/alignment/software/")
     (synopsis "Multiple sequence alignment program")
     (description
-- 
2.4.3