[PATCH] gnu: Add bio-blastxmlparser.

[Pjotr Prins]

* gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable.
---
 gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1f34211..b9e1158 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2642,3 +2642,28 @@ position for indels.  Bio-locus allows users to store 
this chr+pos or
 chr+pos+alt information in a database.")
     (home-page "https://github.com/pjotrp/bio-locus";)
     (license license:expat)))
+
+(define-public bio-blastxmlparser
+  (package
+    (name "bio-blastxmlparser")
+    (version "2.0.4")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (rubygems-uri "bio-blastxmlparser" version))
+        (sha256
+          (base32
+           "1wf4qygcmdjgcqm6flmvsagfr1gs9lf63mj32qv3z1f481zc5692"))))
+    (build-system ruby-build-system)
+    (propagated-inputs
+      `(("ruby-bio-logger" ,ruby-bio-logger)
+        ("ruby-nokogiri" ,ruby-nokogiri)))
+    (inputs
+     `(("ruby-rspec" ,ruby-rspec)))
+    (synopsis "Fast big data BLAST XML parser and library")
+    (description "Very fast parallel big-data BLAST XML file parser
+which can be used as command line utility.  Use blastxmlparser to:
+Parse BLAST XML; filter output; generate FASTA, JSON, YAML, RDF,
+JSON-LD, HTML, csv, tabular output etc.")
+    (home-page "http://github.com/pjotrp/blastxmlparser";)
+    (license license:expat)))
-- 
2.4.3