86/215: gnu: r-gwascat: Update to 2.16.0.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 1b454f9f691a5b317e786b61bd019df436421e7a
Author: Ricardo Wurmus <address@hidden>
Date:   Sun May 5 23:46:28 2019 +0200

    gnu: r-gwascat: Update to 2.16.0.
    
    * gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.16.0.
    [propagated-inputs]: Remove r-annotationhub, r-ggbio, r-ggplot2, 
r-gqtlstats,
    r-graph, r-gviz, r-snpstats, r-summarizedexperiment, and 
r-variantannotation.
---
 gnu/packages/bioinformatics.scm | 15 +++------------
 1 file changed, 3 insertions(+), 12 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ad94faf..1139abb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10302,36 +10302,27 @@ with your data.")
 (define-public r-gwascat
   (package
     (name "r-gwascat")
-    (version "2.14.0")
+    (version "2.16.0")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "gwascat" version))
        (sha256
         (base32
-         "1fnyjydhicq4ayrv0lqjv48h9bd72h40s6l82g1h2ng0icwz38g0"))))
+         "0akb36mrybmxbb1bc9kgxbnj3cdypfylj3yzrmhjwqxml03mg61i"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-annotationdbi" ,r-annotationdbi)
-       ("r-annotationhub" ,r-annotationhub)
        ("r-biocgenerics" ,r-biocgenerics)
        ("r-biostrings" ,r-biostrings)
        ("r-genomeinfodb" ,r-genomeinfodb)
        ("r-genomicfeatures" ,r-genomicfeatures)
        ("r-genomicranges" ,r-genomicranges)
-       ("r-ggbio" ,r-ggbio)
-       ("r-ggplot2" ,r-ggplot2)
-       ("r-gqtlstats" ,r-gqtlstats)
-       ("r-graph" ,r-graph)
-       ("r-gviz" ,r-gviz)
        ("r-homo-sapiens" ,r-homo-sapiens)
        ("r-iranges" ,r-iranges)
        ("r-rsamtools" ,r-rsamtools)
        ("r-rtracklayer" ,r-rtracklayer)
-       ("r-s4vectors" ,r-s4vectors)
-       ("r-snpstats" ,r-snpstats)
-       ("r-summarizedexperiment" ,r-summarizedexperiment)
-       ("r-variantannotation" ,r-variantannotation)))
+       ("r-s4vectors" ,r-s4vectors)))
     (home-page "https://bioconductor.org/packages/gwascat";)
     (synopsis "Tools for data in the EMBL-EBI GWAS catalog")
     (description