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02/02: gnu: cd-hit: Support longer sequences.


From: guix-commits
Subject: 02/02: gnu: cd-hit: Support longer sequences.
Date: Thu, 7 Mar 2019 07:38:20 -0500 (EST)

rekado pushed a commit to branch master
in repository guix.

commit 3b296475bf6a54fc973cb11695427fee9ec3dcab
Author: Ricardo Wurmus <address@hidden>
Date:   Thu Mar 7 13:24:23 2019 +0100

    gnu: cd-hit: Support longer sequences.
    
    * gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Pass MAX_SEQ to make
    flags.
---
 gnu/packages/bioinformatics.scm | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c0e4628..2a7d334 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1770,7 +1770,9 @@ high-throughput sequencing data – with an emphasis on 
simplicity.")
      `(#:tests? #f ; there are no tests
        #:make-flags
        ;; Executables are copied directly to the PREFIX.
-       (list (string-append "PREFIX=" (assoc-ref %outputs "out") "/bin"))
+       (list (string-append "PREFIX=" (assoc-ref %outputs "out") "/bin")
+             ;; Support longer sequences (e.g. Pacbio sequences)
+             "MAX_SEQ=60000000")
        #:phases
        (modify-phases %standard-phases
          ;; No "configure" script



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