02/14: gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor).

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 66e35ce63b346f5f13b2d48a76bc0da14637c58c
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Mar 6 21:16:33 2019 +0100

    gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages 
bioconductor).
    
    * gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): 
Move
    from here...
    * gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): ...to
    here.
---
 gnu/packages/bioconductor.scm   | 32 ++++++++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 32 --------------------------------
 2 files changed, 32 insertions(+), 32 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f3ea87c..316be1c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -224,6 +224,38 @@ based on mapping using Entrez Gene identifiers.")
 genomes and gene ID formats, largely based on the UCSC table browser.")
     (license license:lgpl2.0+)))
 
+(define-public r-txdb-hsapiens-ucsc-hg19-knowngene
+  (package
+    (name "r-txdb-hsapiens-ucsc-hg19-knowngene")
+    (version "3.2.2")
+    (source (origin
+              (method url-fetch)
+              ;; We cannot use bioconductor-uri here because this tarball is
+              ;; located under "data/annotation/" instead of "bioc/".
+              (uri (string-append "https://bioconductor.org/packages/";
+                                  "release/data/annotation/src/contrib"
+                                  "/TxDb.Hsapiens.UCSC.hg19.knownGene_"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"))))
+    (properties
+     `((upstream-name . "TxDb.Hsapiens.UCSC.hg19.knownGene")))
+    (build-system r-build-system)
+    ;; As this package provides little more than a very large data file it
+    ;; doesn't make sense to build substitutes.
+    (arguments `(#:substitutable? #f))
+    (propagated-inputs
+     `(("r-genomicfeatures" ,r-genomicfeatures)))
+    (home-page
+     "https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/";)
+    (synopsis "Annotation package for human genome in TxDb format")
+    (description
+     "This package provides an annotation database of Homo sapiens genome
+data.  It is derived from the UCSC hg19 genome and based on the \"knownGene\"
+track.  The database is exposed as a @code{TxDb} object.")
+    (license license:artistic2.0)))
+
 (define-public r-txdb-mmusculus-ucsc-mm9-knowngene
   (package
     (name "r-txdb-mmusculus-ucsc-mm9-knowngene")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 73d6ecf..82f45b3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6709,38 +6709,6 @@ annotation infrastructure.")
      "This package provides a pipeline for the analysis of GRO-seq data.")
     (license license:gpl3+)))
 
-(define-public r-txdb-hsapiens-ucsc-hg19-knowngene
-  (package
-    (name "r-txdb-hsapiens-ucsc-hg19-knowngene")
-    (version "3.2.2")
-    (source (origin
-              (method url-fetch)
-              ;; We cannot use bioconductor-uri here because this tarball is
-              ;; located under "data/annotation/" instead of "bioc/".
-              (uri (string-append "https://bioconductor.org/packages/";
-                                  "release/data/annotation/src/contrib"
-                                  "/TxDb.Hsapiens.UCSC.hg19.knownGene_"
-                                  version ".tar.gz"))
-              (sha256
-               (base32
-                "1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"))))
-    (properties
-     `((upstream-name . "TxDb.Hsapiens.UCSC.hg19.knownGene")))
-    (build-system r-build-system)
-    ;; As this package provides little more than a very large data file it
-    ;; doesn't make sense to build substitutes.
-    (arguments `(#:substitutable? #f))
-    (propagated-inputs
-     `(("r-genomicfeatures" ,r-genomicfeatures)))
-    (home-page
-     "https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/";)
-    (synopsis "Annotation package for human genome in TxDb format")
-    (description
-     "This package provides an annotation database of Homo sapiens genome
-data.  It is derived from the UCSC hg19 genome and based on the \"knownGene\"
-track.  The database is exposed as a @code{TxDb} object.")
-    (license license:artistic2.0)))
-
 (define-public r-sparql
   (package
   (name "r-sparql")