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01/01: gnu: Move R packages from web.scm to cran.scm.
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From: |
guix-commits |
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Subject: |
01/01: gnu: Move R packages from web.scm to cran.scm. |
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Date: |
Mon, 7 Jan 2019 09:05:57 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 92ce18833122e7da2adf6fabae71756a93c2a8dc
Author: Ricardo Wurmus <address@hidden>
Date: Mon Jan 7 14:59:06 2019 +0100
gnu: Move R packages from web.scm to cran.scm.
* gnu/packages/web.scm (r-httpuv, r-jsonlite, r-servr, r-htmltools,
r-htmlwidgets, r-htmltable, r-curl, r-hwriter, r-rjson, r-shiny,
r-shinydashboard, r-shinyfiles, r-crosstalk, r-rook, r-miniui): Move these
from here...
* gnu/packages/cran.scm: ...to here.
---
gnu/packages/cran.scm | 501 +++++++++++++++++++++++++++++++++++++++++++++++++-
gnu/packages/web.scm | 500 +------------------------------------------------
2 files changed, 501 insertions(+), 500 deletions(-)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 423bb5b..68c4431 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <address@hidden>
+;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <address@hidden>
;;; Copyright © 2017, 2018 Roel Janssen <address@hidden>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <address@hidden>
;;; Copyright © 2017 Raoul Bonnal <address@hidden>
@@ -30,10 +30,12 @@
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
+ #:use-module (guix git-download)
#:use-module (guix utils)
#:use-module (guix build-system r)
#:use-module (gnu packages base)
#:use-module (gnu packages compression)
+ #:use-module (gnu packages curl)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gl)
@@ -41,6 +43,8 @@
#:use-module (gnu packages gtk)
#:use-module (gnu packages haskell)
#:use-module (gnu packages image)
+ #:use-module (gnu packages javascript)
+ #:use-module (gnu packages lisp)
#:use-module (gnu packages machine-learning)
#:use-module (gnu packages maths)
#:use-module (gnu packages mpi)
@@ -276,6 +280,501 @@ the embedded @code{RapidXML} C++ library.")
into a pipeline of data manipulation and visualisation.")
(license license:gpl3)))
+(define-public r-httpuv
+ (package
+ (name "r-httpuv")
+ (version "1.4.5")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "httpuv" version))
+ (sha256
+ (base32
+ "1ddpcarzf694h0gy5pdz7l5glqfv4hr9dmxb4vw7yqd0bga174gi"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("r-rcpp" ,r-rcpp)
+ ("pkg-config" ,pkg-config)))
+ (propagated-inputs
+ `(("r-bh" ,r-bh)
+ ("r-later" ,r-later)
+ ("r-promises" ,r-promises)))
+ (home-page "https://github.com/rstudio/httpuv";)
+ (synopsis "HTTP and WebSocket server library for R")
+ (description
+ "The httpuv package provides low-level socket and protocol support for
+handling HTTP and WebSocket requests directly from within R. It is primarily
+intended as a building block for other packages, rather than making it
+particularly easy to create complete web applications using httpuv alone.")
+ ;; This package includes third-party code that was originally released
+ ;; under various non-copyleft licenses. Full licensing information can be
+ ;; obtained here: https://github.com/rstudio/httpuv/blob/master/LICENSE
+ (license license:gpl3+)))
+
+(define-public r-jsonlite
+ (package
+ (name "r-jsonlite")
+ (version "1.5")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "jsonlite" version))
+ (sha256
+ (base32
+ "00lfg464jhf7k01bal9pcjvbdf5cxk6xi2h46hccp1x3h883g434"))))
+ (build-system r-build-system)
+ (home-page "http://arxiv.org/abs/1403.2805";)
+ (synopsis "Robust, high performance JSON parser and generator for R")
+ (description
+ "The jsonlite package provides a fast JSON parser and generator optimized
+for statistical data and the web. It offers flexible, robust, high
+performance tools for working with JSON in R and is particularly powerful for
+building pipelines and interacting with a web API. In addition to converting
+JSON data from/to R objects, jsonlite contains functions to stream, validate,
+and prettify JSON data. The unit tests included with the package verify that
+all edge cases are encoded and decoded consistently for use with dynamic data
+in systems and applications.")
+ (license license:expat)))
+
+(define-public r-servr
+ (package
+ (name "r-servr")
+ (version "0.11")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "servr" version))
+ (sha256
+ (base32
+ "0yj3p1risf269n25dd56lqv82dsxv6a0aq4bcc1ddn9wv7h2xdfi"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-httpuv" ,r-httpuv)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-mime" ,r-mime)
+ ("r-xfun" ,r-xfun)))
+ (home-page "https://github.com/yihui/servr";)
+ (synopsis "Simple HTTP server to serve static files or dynamic documents")
+ (description
+ "Servr provides an HTTP server in R to serve static files, or dynamic
+documents that can be converted to HTML files (e.g., R Markdown) under a given
+directory.")
+ (license license:expat)))
+
+(define-public r-htmltools
+ (package
+ (name "r-htmltools")
+ (version "0.3.6")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "htmltools" version))
+ (sha256
+ (base32
+ "18k8r1s8sz1jy7dkz35n69wj20xhmllr53xmwb4pdzf2z61gpbs4"))))
+ (build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; See https://github.com/rstudio/htmltools/pull/68
+ ;; The resource files are in the store and have mode 444. After
+ ;; copying the files R fails to remove them again because it doesn't
+ ;; have write access to them.
+ (add-after 'unpack 'copy-files-without-mode
+ (lambda _
+ (substitute* "R/html_dependency.R"
+ (("file.copy\\(from, to, " prefix)
+ (string-append prefix
+ "copy.mode = FALSE, ")))
+ #t)))))
+ (propagated-inputs
+ `(("r-digest" ,r-digest)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://cran.r-project.org/web/packages/htmltools";)
+ (synopsis "R tools for HTML")
+ (description
+ "This package provides tools for HTML generation and output in R.")
+ (license license:expat)))
+
+(define-public r-htmlwidgets
+ (package
+ (name "r-htmlwidgets")
+ (version "1.3")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "htmlwidgets" version))
+ (sha256
+ (base32
+ "04jsdh14l2zifbjpbbh23w7bxz1wpsas0zb2gy2zwv4yqamzzr7i"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-htmltools" ,r-htmltools)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-yaml" ,r-yaml)))
+ (home-page "https://github.com/ramnathv/htmlwidgets";)
+ (synopsis "HTML Widgets for R")
+ (description
+ "HTML widgets is a framework for creating HTML widgets that render in
+various contexts including the R console, R Markdown documents, and Shiny web
+applications.")
+ (license license:expat)))
+
+(define-public r-htmltable
+ (package
+ (name "r-htmltable")
+ (version "1.12")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "htmlTable" version))
+ (sha256
+ (base32
+ "1n5136vb7mi4rxl5jgwdmdhn4mwv2pcqyw2mrj406ih4hy6hpxa2"))))
+ (properties `((upstream-name . "htmlTable")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-checkmate" ,r-checkmate)
+ ("r-htmltools" ,r-htmltools)
+ ("r-htmlwidgets" ,r-htmlwidgets)
+ ("r-knitr" ,r-knitr)
+ ("r-magrittr" ,r-magrittr)
+ ("r-rstudioapi" ,r-rstudioapi)
+ ("r-stringr" ,r-stringr)))
+ (home-page "http://gforge.se/packages/";)
+ (synopsis "Advanced tables for Markdown/HTML")
+ (description
+ "This package provides functions to build tables with advanced layout
+elements such as row spanners, column spanners, table spanners, zebra
+striping, and more. While allowing advanced layout, the underlying
+CSS-structure is simple in order to maximize compatibility with word
+processors such as LibreOffice. The package also contains a few text
+formatting functions that help outputting text compatible with HTML or
+LaTeX.")
+ (license license:gpl3+)))
+
+(define-public r-curl
+ (package
+ (name "r-curl")
+ (version "3.2")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "curl" version))
+ (sha256
+ (base32
+ "15hmy71310hnf9yqvz0icx4cq939gv6iqaifzlfdh2ia8akawdhn"))))
+ (build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; The environment variable CURL_CA_BUNDLE is only respected when
+ ;; running Windows, so we disable the platform checks.
+ ;; This can be removed once the libcurl has been patched.
+ (add-after 'unpack 'allow-CURL_CA_BUNDLE
+ (lambda _
+ (substitute* "R/onload.R"
+ (("if \\(!grepl\\(\"mingw\".*")
+ "if (FALSE)\n"))
+ (substitute* "src/handle.c"
+ (("#ifdef _WIN32") "#if 1"))
+ #t)))))
+ (inputs
+ `(("libcurl" ,curl)))
+ (home-page "https://github.com/jeroenooms/curl";)
+ (synopsis "HTTP client for R")
+ (description
+ "The @code{curl()} and @code{curl_download()} functions provide highly
+configurable drop-in replacements for base @code{url()} and
address@hidden()} with better performance, support for encryption, gzip
+compression, authentication, and other @code{libcurl} goodies. The core of
+the package implements a framework for performing fully customized requests
+where data can be processed either in memory, on disk, or streaming via the
+callback or connection interfaces.")
+ (license license:expat)))
+
+(define-public r-hwriter
+ (package
+ (name "r-hwriter")
+ (version "1.3.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "hwriter" version))
+ (sha256
+ (base32
+ "0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb"))))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/hwriter";)
+ (synopsis "Output R objects in HTML format")
+ (description
+ "This package provides easy-to-use and versatile functions to output R
+objects in HTML format.")
+ (license license:lgpl2.1+)))
+
+(define-public r-rjson
+ (package
+ (name "r-rjson")
+ (version "0.2.20")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "rjson" version))
+ (sha256
+ (base32
+ "0v1zvdd3svnavklh7y5xbwrrkbvx6053r4c5hgnk7hz7bqg7qa1s"))))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/rjson";)
+ (synopsis "JSON library for R")
+ (description
+ "This package provides functions to convert R objects into JSON objects
+and vice-versa.")
+ (license license:gpl2+)))
+
+(define-public r-shiny
+ (package
+ (name "r-shiny")
+ (version "1.1.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/rstudio/shiny.git";)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "041q2gzvzs13syfhbirmkik96asdji8dxnnbs63j7v1ks97hrvvz"))))
+ (build-system r-build-system)
+ (arguments
+ `(#:modules ((guix build r-build-system)
+ (guix build minify-build-system)
+ (guix build utils)
+ (ice-9 match))
+ #:imported-modules (,@%r-build-system-modules
+ (guix build minify-build-system))
+ #:phases
+ (modify-phases (@ (guix build r-build-system) %standard-phases)
+ (add-after 'unpack 'replace-bundled-minified-JavaScript
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((replace-file (lambda (old new)
+ (format #t "replacing ~a with ~a\n" old new)
+ (delete-file old)
+ (symlink new old))))
+ ;; NOTE: Files in ./inst/www/shared/datepicker/js/locales/
+ ;; contain just data. They are not minified code, so we don't
+ ;; replace them.
+ (with-directory-excursion "inst/www/shared"
+ (replace-file "bootstrap/shim/respond.min.js"
+ (string-append (assoc-ref inputs "js-respond")
+
"/share/javascript/respond.min.js"))
+ (replace-file "bootstrap/shim/html5shiv.min.js"
+ (string-append (assoc-ref inputs "js-html5shiv")
+
"/share/javascript/html5shiv.min.js"))
+ (replace-file "json2-min.js"
+ (string-append (assoc-ref inputs "js-json2")
+
"/share/javascript/json2.min.js"))
+ (replace-file "strftime/strftime-min.js"
+ (string-append (assoc-ref inputs "js-strftime")
+
"/share/javascript/strftime.min.js"))
+ (replace-file "highlight/highlight.pack.js"
+ (string-append (assoc-ref inputs "js-highlight")
+
"/share/javascript/highlight.min.js"))
+ (replace-file "datatables/js/jquery.dataTables.min.js"
+ (string-append (assoc-ref inputs
"js-datatables")
+
"/share/javascript/jquery.dataTables.min.js"))
+ (replace-file "selectize/js/selectize.min.js"
+ (string-append (assoc-ref inputs "js-selectize")
+
"/share/javascript/selectize.min.js"))
+ (replace-file "selectize/js/es5-shim.min.js"
+ (string-append (assoc-ref inputs "js-es5-shim")
+
"/share/javascript/es5-shim.min.js"))
+ (for-each (match-lambda
+ ((source . target)
+ (delete-file target)
+ (minify source #:target target)))
+ '(("jqueryui/jquery-ui.js" .
+ "jqueryui/jquery-ui.min.js")
+ ("showdown/src/showdown.js" .
+ "showdown/compressed/showdown.js")
+ ("datepicker/js/bootstrap-datepicker.js" .
+ "datepicker/js/bootstrap-datepicker.min.js")
+ ("ionrangeslider/js/ion.rangeSlider.js" .
+ "ionrangeslider/js/ion.rangeSlider.min.js")
+ ("bootstrap/js/bootstrap.js" .
+ "bootstrap/js/bootstrap.min.js")
+ ("shiny.js" .
+ "shiny.min.js")
+ ("jquery.js" .
+ "jquery.min.js")))))
+ #t)))))
+ (propagated-inputs
+ `(("r-crayon" ,r-crayon)
+ ("r-httpuv" ,r-httpuv)
+ ("r-mime" ,r-mime)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-xtable" ,r-xtable)
+ ("r-digest" ,r-digest)
+ ("r-htmltools" ,r-htmltools)
+ ("r-r6" ,r-r6)
+ ("r-sourcetools" ,r-sourcetools)))
+ (inputs
+ `(("js-datatables" ,js-datatables)
+ ("js-html5shiv" ,js-html5shiv)
+ ("js-json2" ,js-json2)
+ ("js-respond" ,js-respond)
+ ("js-selectize" ,js-selectize)
+ ("js-strftime" ,js-strftime)
+ ("js-highlight" ,js-highlight)
+ ("js-es5-shim" ,js-es5-shim)))
+ (home-page "http://shiny.rstudio.com";)
+ (synopsis "Easy interactive web applications with R")
+ (description
+ "Makes it incredibly easy to build interactive web applications
+with R. Automatic \"reactive\" binding between inputs and outputs and
+extensive prebuilt widgets make it possible to build beautiful,
+responsive, and powerful applications with minimal effort.")
+ (license license:artistic2.0)))
+
+(define-public r-shinydashboard
+ (package
+ (name "r-shinydashboard")
+ (version "0.7.1")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "shinydashboard" version))
+ (sha256
+ (base32
+ "0khac8b27q3swdw07kl609hm0fjfjsjv591b388q99mqqr2rk92i"))))
+ (build-system r-build-system)
+ ;; The directory inst/AdminLTE/ contains a minified JavaScript file.
+ ;; Regenerate it from the included sources.
+ (arguments
+ `(#:modules ((guix build utils)
+ (guix build r-build-system)
+ (ice-9 popen))
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'generate-minified-javascript
+ (lambda _
+ (with-directory-excursion "inst/AdminLTE"
+ (delete-file "app.min.js")
+ (let ((minified (open-pipe* OPEN_READ "uglify-js" "app.js")))
+ (call-with-output-file "app.min.js"
+ (lambda (port)
+ (dump-port minified port))))))))))
+ (propagated-inputs
+ `(("r-htmltools" ,r-htmltools)
+ ("r-promises" ,r-promises)
+ ("r-shiny" ,r-shiny)))
+ (native-inputs
+ `(("uglify-js" ,uglify-js)))
+ (home-page "http://rstudio.github.io/shinydashboard/";)
+ (synopsis "Create dashboards with shiny")
+ (description "This package provides an extension to the Shiny web
+application framework for R, making it easy to create attractive dashboards.")
+ ;; This package includes software that was released under the Expat
+ ;; license, but the whole package is released under GPL version 2 or
+ ;; later.
+ (license license:gpl2+)))
+
+(define-public r-shinyfiles
+ (package
+ (name "r-shinyfiles")
+ (version "0.7.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "shinyFiles" version))
+ (sha256
+ (base32
+ "0dlcjrw96x72grg6j915070x8x98l7629pn86gf148iknflm7gd5"))))
+ (properties `((upstream-name . "shinyFiles")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-fs" ,r-fs)
+ ("r-htmltools" ,r-htmltools)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-shiny" ,r-shiny)
+ ("r-tibble" ,r-tibble)))
+ (home-page "https://github.com/thomasp85/shinyFiles";)
+ (synopsis "Server-side file system viewer for Shiny")
+ (description
+ "This package provides functionality for client-side navigation of the
+server side file system in shiny apps. In case the app is running locally
+this gives the user direct access to the file system without the need to
+\"download\" files to a temporary location. Both file and folder selection as
+well as file saving is available.")
+ (license license:gpl2+)))
+
+(define-public r-crosstalk
+ (package
+ (name "r-crosstalk")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "crosstalk" version))
+ (sha256
+ (base32
+ "0lfa89vhrzi7a1rghmygcjr8gzddw35sinb3jx6g49mc9jias7mk"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)
+ ("r-htmltools" ,r-htmltools)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-lazyeval" ,r-lazyeval)
+ ("r-r6" ,r-r6)
+ ("r-shiny" ,r-shiny)))
+ (home-page "https://rstudio.github.io/crosstalk/";)
+ (synopsis "Inter-widget interactivity for HTML widgets")
+ (description
+ "This package provides building blocks for allowing HTML widgets to
+communicate with each other, with Shiny or without (i.e. static @code{.html}
+files). It currently supports linked brushing and filtering.")
+ (license license:expat)))
+
+(define-public r-rook
+ (package
+ (name "r-rook")
+ (version "1.1-1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "Rook" version))
+ (sha256
+ (base32
+ "00s9a0kr9rwxvlq433daxjk4ji8m0w60hjdprf502msw9kxfrx00"))))
+ (properties `((upstream-name . "Rook")))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-brew" ,r-brew)))
+ (home-page "https://cran.r-project.org/web/packages/Rook";)
+ (synopsis "Web server interface for R")
+ (description
+ "This package contains the Rook specification and convenience software
+for building and running Rook applications. A Rook application is an R
+reference class object that implements a @code{call} method or an R closure
+that takes exactly one argument, an environment, and returns a list with three
+named elements: the @code{status}, the @code{headers}, and the @code{body}.")
+ (license license:gpl2)))
+
+(define-public r-miniui
+ (package
+ (name "r-miniui")
+ (version "0.1.1.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "miniUI" version))
+ (sha256
+ (base32
+ "1h5h2sc57h95d6bsgs95l26911g38hvjc1v50bc31xl9689l2as5"))))
+ (properties `((upstream-name . "miniUI")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-htmltools" ,r-htmltools)
+ ("r-shiny" ,r-shiny)))
+ (home-page "https://cran.r-project.org/web/packages/miniUI/";)
+ (synopsis "Shiny UI widgets for small screens")
+ (description
+ "This package provides UI widget and layout functions for writing Shiny
apps that
+work well on small screens.")
+ (license license:gpl3)))
+
(define-public r-haven
(package
(name "r-haven")
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index 84bd795..fb37f82 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -3,7 +3,7 @@
;;; Copyright © 2013 Aljosha Papsch <address@hidden>
;;; Copyright © 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <address@hidden>
;;; Copyright © 2014, 2015, 2016 Mark H Weaver <address@hidden>
-;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <address@hidden>
+;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <address@hidden>
;;; Copyright © 2018 Raoul Jean Pierre Bonnal <address@hidden>
;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <address@hidden>
;;; Copyright © 2015, 2016, 2017, 2018 Eric Bavier <address@hidden>
@@ -58,7 +58,6 @@
#:use-module (guix build-system glib-or-gtk)
#:use-module (guix build-system perl)
#:use-module (guix build-system cmake)
- #:use-module (guix build-system r)
#:use-module (guix build-system trivial)
#:use-module (guix build-system python)
#:use-module (guix build-system ant)
@@ -68,7 +67,6 @@
#:use-module (gnu packages adns)
#:use-module (gnu packages apr)
#:use-module (gnu packages check)
- #:use-module (gnu packages cran)
#:use-module (gnu packages documentation)
#:use-module (gnu packages docbook)
#:use-module (gnu packages autotools)
@@ -90,7 +88,6 @@
#:use-module (gnu packages gtk)
#:use-module (gnu packages guile)
#:use-module (gnu packages java)
- #:use-module (gnu packages javascript)
#:use-module (gnu packages jemalloc)
#:use-module (gnu packages image)
#:use-module (gnu packages imagemagick)
@@ -3851,251 +3848,6 @@ CDF, Atom 0.3, and Atom 1.0 feeds.")
(define-public python2-feedparser
(package-with-python2 python-feedparser))
-(define-public r-httpuv
- (package
- (name "r-httpuv")
- (version "1.4.5")
- (source (origin
- (method url-fetch)
- (uri (cran-uri "httpuv" version))
- (sha256
- (base32
- "1ddpcarzf694h0gy5pdz7l5glqfv4hr9dmxb4vw7yqd0bga174gi"))))
- (build-system r-build-system)
- (native-inputs
- `(("r-rcpp" ,r-rcpp)
- ("pkg-config" ,pkg-config)))
- (propagated-inputs
- `(("r-bh" ,r-bh)
- ("r-later" ,r-later)
- ("r-promises" ,r-promises)))
- (home-page "https://github.com/rstudio/httpuv";)
- (synopsis "HTTP and WebSocket server library for R")
- (description
- "The httpuv package provides low-level socket and protocol support for
-handling HTTP and WebSocket requests directly from within R. It is primarily
-intended as a building block for other packages, rather than making it
-particularly easy to create complete web applications using httpuv alone.")
- ;; This package includes third-party code that was originally released
- ;; under various non-copyleft licenses. Full licensing information can be
- ;; obtained here: https://github.com/rstudio/httpuv/blob/master/LICENSE
- (license l:gpl3+)))
-
-(define-public r-jsonlite
- (package
- (name "r-jsonlite")
- (version "1.5")
- (source (origin
- (method url-fetch)
- (uri (cran-uri "jsonlite" version))
- (sha256
- (base32
- "00lfg464jhf7k01bal9pcjvbdf5cxk6xi2h46hccp1x3h883g434"))))
- (build-system r-build-system)
- (home-page "http://arxiv.org/abs/1403.2805";)
- (synopsis "Robust, high performance JSON parser and generator for R")
- (description
- "The jsonlite package provides a fast JSON parser and generator optimized
-for statistical data and the web. It offers flexible, robust, high
-performance tools for working with JSON in R and is particularly powerful for
-building pipelines and interacting with a web API. In addition to converting
-JSON data from/to R objects, jsonlite contains functions to stream, validate,
-and prettify JSON data. The unit tests included with the package verify that
-all edge cases are encoded and decoded consistently for use with dynamic data
-in systems and applications.")
- (license l:expat)))
-
-(define-public r-servr
- (package
- (name "r-servr")
- (version "0.11")
- (source (origin
- (method url-fetch)
- (uri (cran-uri "servr" version))
- (sha256
- (base32
- "0yj3p1risf269n25dd56lqv82dsxv6a0aq4bcc1ddn9wv7h2xdfi"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-httpuv" ,r-httpuv)
- ("r-jsonlite" ,r-jsonlite)
- ("r-mime" ,r-mime)
- ("r-xfun" ,r-xfun)))
- (home-page "https://github.com/yihui/servr";)
- (synopsis "Simple HTTP server to serve static files or dynamic documents")
- (description
- "Servr provides an HTTP server in R to serve static files, or dynamic
-documents that can be converted to HTML files (e.g., R Markdown) under a given
-directory.")
- (license l:expat)))
-
-(define-public r-htmltools
- (package
- (name "r-htmltools")
- (version "0.3.6")
- (source (origin
- (method url-fetch)
- (uri (cran-uri "htmltools" version))
- (sha256
- (base32
- "18k8r1s8sz1jy7dkz35n69wj20xhmllr53xmwb4pdzf2z61gpbs4"))))
- (build-system r-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- ;; See https://github.com/rstudio/htmltools/pull/68
- ;; The resource files are in the store and have mode 444. After
- ;; copying the files R fails to remove them again because it doesn't
- ;; have write access to them.
- (add-after 'unpack 'copy-files-without-mode
- (lambda _
- (substitute* "R/html_dependency.R"
- (("file.copy\\(from, to, " prefix)
- (string-append prefix
- "copy.mode = FALSE, ")))
- #t)))))
- (propagated-inputs
- `(("r-digest" ,r-digest)
- ("r-rcpp" ,r-rcpp)))
- (home-page "https://cran.r-project.org/web/packages/htmltools";)
- (synopsis "R tools for HTML")
- (description
- "This package provides tools for HTML generation and output in R.")
- (license l:expat)))
-
-(define-public r-htmlwidgets
- (package
- (name "r-htmlwidgets")
- (version "1.3")
- (source (origin
- (method url-fetch)
- (uri (cran-uri "htmlwidgets" version))
- (sha256
- (base32
- "04jsdh14l2zifbjpbbh23w7bxz1wpsas0zb2gy2zwv4yqamzzr7i"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-htmltools" ,r-htmltools)
- ("r-jsonlite" ,r-jsonlite)
- ("r-yaml" ,r-yaml)))
- (home-page "https://github.com/ramnathv/htmlwidgets";)
- (synopsis "HTML Widgets for R")
- (description
- "HTML widgets is a framework for creating HTML widgets that render in
-various contexts including the R console, R Markdown documents, and Shiny web
-applications.")
- (license l:expat)))
-
-(define-public r-htmltable
- (package
- (name "r-htmltable")
- (version "1.12")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "htmlTable" version))
- (sha256
- (base32
- "1n5136vb7mi4rxl5jgwdmdhn4mwv2pcqyw2mrj406ih4hy6hpxa2"))))
- (properties `((upstream-name . "htmlTable")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-checkmate" ,r-checkmate)
- ("r-htmltools" ,r-htmltools)
- ("r-htmlwidgets" ,r-htmlwidgets)
- ("r-knitr" ,r-knitr)
- ("r-magrittr" ,r-magrittr)
- ("r-rstudioapi" ,r-rstudioapi)
- ("r-stringr" ,r-stringr)))
- (home-page "http://gforge.se/packages/";)
- (synopsis "Advanced tables for Markdown/HTML")
- (description
- "This package provides functions to build tables with advanced layout
-elements such as row spanners, column spanners, table spanners, zebra
-striping, and more. While allowing advanced layout, the underlying
-CSS-structure is simple in order to maximize compatibility with word
-processors such as LibreOffice. The package also contains a few text
-formatting functions that help outputting text compatible with HTML or
-LaTeX.")
- (license l:gpl3+)))
-
-(define-public r-curl
- (package
- (name "r-curl")
- (version "3.2")
- (source (origin
- (method url-fetch)
- (uri (cran-uri "curl" version))
- (sha256
- (base32
- "15hmy71310hnf9yqvz0icx4cq939gv6iqaifzlfdh2ia8akawdhn"))))
- (build-system r-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- ;; The environment variable CURL_CA_BUNDLE is only respected when
- ;; running Windows, so we disable the platform checks.
- ;; This can be removed once the libcurl has been patched.
- (add-after 'unpack 'allow-CURL_CA_BUNDLE
- (lambda _
- (substitute* "R/onload.R"
- (("if \\(!grepl\\(\"mingw\".*")
- "if (FALSE)\n"))
- (substitute* "src/handle.c"
- (("#ifdef _WIN32") "#if 1"))
- #t)))))
- (inputs
- `(("libcurl" ,curl)))
- (home-page "https://github.com/jeroenooms/curl";)
- (synopsis "HTTP client for R")
- (description
- "The @code{curl()} and @code{curl_download()} functions provide highly
-configurable drop-in replacements for base @code{url()} and
address@hidden()} with better performance, support for encryption, gzip
-compression, authentication, and other @code{libcurl} goodies. The core of
-the package implements a framework for performing fully customized requests
-where data can be processed either in memory, on disk, or streaming via the
-callback or connection interfaces.")
- (license l:expat)))
-
-(define-public r-hwriter
- (package
- (name "r-hwriter")
- (version "1.3.2")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "hwriter" version))
- (sha256
- (base32
- "0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb"))))
- (build-system r-build-system)
- (home-page "https://cran.r-project.org/web/packages/hwriter";)
- (synopsis "Output R objects in HTML format")
- (description
- "This package provides easy-to-use and versatile functions to output R
-objects in HTML format.")
- (license l:lgpl2.1+)))
-
-(define-public r-rjson
- (package
- (name "r-rjson")
- (version "0.2.20")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "rjson" version))
- (sha256
- (base32
- "0v1zvdd3svnavklh7y5xbwrrkbvx6053r4c5hgnk7hz7bqg7qa1s"))))
- (build-system r-build-system)
- (home-page "https://cran.r-project.org/web/packages/rjson";)
- (synopsis "JSON library for R")
- (description
- "This package provides functions to convert R objects into JSON objects
-and vice-versa.")
- (license l:gpl2+)))
-
(define-public gumbo-parser
(package
(name "gumbo-parser")
@@ -5529,233 +5281,6 @@ snippets on @url{https://commandlinefu.com}.";)
(define-public python2-clf
(package-with-python2 python-clf))
-(define-public r-shiny
- (package
- (name "r-shiny")
- (version "1.1.0")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/rstudio/shiny.git";)
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "041q2gzvzs13syfhbirmkik96asdji8dxnnbs63j7v1ks97hrvvz"))))
- (build-system r-build-system)
- (arguments
- `(#:modules ((guix build r-build-system)
- (guix build minify-build-system)
- (guix build utils)
- (ice-9 match))
- #:imported-modules (,@%r-build-system-modules
- (guix build minify-build-system))
- #:phases
- (modify-phases (@ (guix build r-build-system) %standard-phases)
- (add-after 'unpack 'replace-bundled-minified-JavaScript
- (lambda* (#:key inputs #:allow-other-keys)
- (let ((replace-file (lambda (old new)
- (format #t "replacing ~a with ~a\n" old new)
- (delete-file old)
- (symlink new old))))
- ;; NOTE: Files in ./inst/www/shared/datepicker/js/locales/
- ;; contain just data. They are not minified code, so we don't
- ;; replace them.
- (with-directory-excursion "inst/www/shared"
- (replace-file "bootstrap/shim/respond.min.js"
- (string-append (assoc-ref inputs "js-respond")
-
"/share/javascript/respond.min.js"))
- (replace-file "bootstrap/shim/html5shiv.min.js"
- (string-append (assoc-ref inputs "js-html5shiv")
-
"/share/javascript/html5shiv.min.js"))
- (replace-file "json2-min.js"
- (string-append (assoc-ref inputs "js-json2")
-
"/share/javascript/json2.min.js"))
- (replace-file "strftime/strftime-min.js"
- (string-append (assoc-ref inputs "js-strftime")
-
"/share/javascript/strftime.min.js"))
- (replace-file "highlight/highlight.pack.js"
- (string-append (assoc-ref inputs "js-highlight")
-
"/share/javascript/highlight.min.js"))
- (replace-file "datatables/js/jquery.dataTables.min.js"
- (string-append (assoc-ref inputs
"js-datatables")
-
"/share/javascript/jquery.dataTables.min.js"))
- (replace-file "selectize/js/selectize.min.js"
- (string-append (assoc-ref inputs "js-selectize")
-
"/share/javascript/selectize.min.js"))
- (replace-file "selectize/js/es5-shim.min.js"
- (string-append (assoc-ref inputs "js-es5-shim")
-
"/share/javascript/es5-shim.min.js"))
- (for-each (match-lambda
- ((source . target)
- (delete-file target)
- (minify source #:target target)))
- '(("jqueryui/jquery-ui.js" .
- "jqueryui/jquery-ui.min.js")
- ("showdown/src/showdown.js" .
- "showdown/compressed/showdown.js")
- ("datepicker/js/bootstrap-datepicker.js" .
- "datepicker/js/bootstrap-datepicker.min.js")
- ("ionrangeslider/js/ion.rangeSlider.js" .
- "ionrangeslider/js/ion.rangeSlider.min.js")
- ("bootstrap/js/bootstrap.js" .
- "bootstrap/js/bootstrap.min.js")
- ("shiny.js" .
- "shiny.min.js")
- ("jquery.js" .
- "jquery.min.js")))))
- #t)))))
- (propagated-inputs
- `(("r-crayon" ,r-crayon)
- ("r-httpuv" ,r-httpuv)
- ("r-mime" ,r-mime)
- ("r-jsonlite" ,r-jsonlite)
- ("r-xtable" ,r-xtable)
- ("r-digest" ,r-digest)
- ("r-htmltools" ,r-htmltools)
- ("r-r6" ,r-r6)
- ("r-sourcetools" ,r-sourcetools)))
- (inputs
- `(("js-datatables" ,js-datatables)
- ("js-html5shiv" ,js-html5shiv)
- ("js-json2" ,js-json2)
- ("js-respond" ,js-respond)
- ("js-selectize" ,js-selectize)
- ("js-strftime" ,js-strftime)
- ("js-highlight" ,js-highlight)
- ("js-es5-shim" ,js-es5-shim)))
- (home-page "http://shiny.rstudio.com";)
- (synopsis "Easy interactive web applications with R")
- (description
- "Makes it incredibly easy to build interactive web applications
-with R. Automatic \"reactive\" binding between inputs and outputs and
-extensive prebuilt widgets make it possible to build beautiful,
-responsive, and powerful applications with minimal effort.")
- (license l:artistic2.0)))
-
-(define-public r-shinydashboard
- (package
- (name "r-shinydashboard")
- (version "0.7.1")
- (source (origin
- (method url-fetch)
- (uri (cran-uri "shinydashboard" version))
- (sha256
- (base32
- "0khac8b27q3swdw07kl609hm0fjfjsjv591b388q99mqqr2rk92i"))))
- (build-system r-build-system)
- ;; The directory inst/AdminLTE/ contains a minified JavaScript file.
- ;; Regenerate it from the included sources.
- (arguments
- `(#:modules ((guix build utils)
- (guix build r-build-system)
- (ice-9 popen))
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'generate-minified-javascript
- (lambda _
- (with-directory-excursion "inst/AdminLTE"
- (delete-file "app.min.js")
- (let ((minified (open-pipe* OPEN_READ "uglify-js" "app.js")))
- (call-with-output-file "app.min.js"
- (lambda (port)
- (dump-port minified port))))))))))
- (propagated-inputs
- `(("r-htmltools" ,r-htmltools)
- ("r-promises" ,r-promises)
- ("r-shiny" ,r-shiny)))
- (native-inputs
- `(("uglify-js" ,uglify-js)))
- (home-page "http://rstudio.github.io/shinydashboard/";)
- (synopsis "Create dashboards with shiny")
- (description "This package provides an extension to the Shiny web
-application framework for R, making it easy to create attractive dashboards.")
- ;; This package includes software that was released under the Expat
- ;; license, but the whole package is released under GPL version 2 or
- ;; later.
- (license l:gpl2+)))
-
-(define-public r-shinyfiles
- (package
- (name "r-shinyfiles")
- (version "0.7.2")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "shinyFiles" version))
- (sha256
- (base32
- "0dlcjrw96x72grg6j915070x8x98l7629pn86gf148iknflm7gd5"))))
- (properties `((upstream-name . "shinyFiles")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-fs" ,r-fs)
- ("r-htmltools" ,r-htmltools)
- ("r-jsonlite" ,r-jsonlite)
- ("r-shiny" ,r-shiny)
- ("r-tibble" ,r-tibble)))
- (home-page "https://github.com/thomasp85/shinyFiles";)
- (synopsis "Server-side file system viewer for Shiny")
- (description
- "This package provides functionality for client-side navigation of the
-server side file system in shiny apps. In case the app is running locally
-this gives the user direct access to the file system without the need to
-\"download\" files to a temporary location. Both file and folder selection as
-well as file saving is available.")
- (license l:gpl2+)))
-
-(define-public r-crosstalk
- (package
- (name "r-crosstalk")
- (version "1.0.0")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "crosstalk" version))
- (sha256
- (base32
- "0lfa89vhrzi7a1rghmygcjr8gzddw35sinb3jx6g49mc9jias7mk"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-ggplot2" ,r-ggplot2)
- ("r-htmltools" ,r-htmltools)
- ("r-jsonlite" ,r-jsonlite)
- ("r-lazyeval" ,r-lazyeval)
- ("r-r6" ,r-r6)
- ("r-shiny" ,r-shiny)))
- (home-page "https://rstudio.github.io/crosstalk/";)
- (synopsis "Inter-widget interactivity for HTML widgets")
- (description
- "This package provides building blocks for allowing HTML widgets to
-communicate with each other, with Shiny or without (i.e. static @code{.html}
-files). It currently supports linked brushing and filtering.")
- (license l:expat)))
-
-(define-public r-rook
- (package
- (name "r-rook")
- (version "1.1-1")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "Rook" version))
- (sha256
- (base32
- "00s9a0kr9rwxvlq433daxjk4ji8m0w60hjdprf502msw9kxfrx00"))))
- (properties `((upstream-name . "Rook")))
- (build-system r-build-system)
- (propagated-inputs `(("r-brew" ,r-brew)))
- (home-page "https://cran.r-project.org/web/packages/Rook";)
- (synopsis "Web server interface for R")
- (description
- "This package contains the Rook specification and convenience software
-for building and running Rook applications. A Rook application is an R
-reference class object that implements a @code{call} method or an R closure
-that takes exactly one argument, an environment, and returns a list with three
-named elements: the @code{status}, the @code{headers}, and the @code{body}.")
- (license l:gpl2)))
-
(define-public rss-bridge
(package
(name "rss-bridge")
@@ -6855,26 +6380,3 @@ compressed JSON header blocks.
provided by Guix. The list of packages is searchable and provides
instructions on how to use Guix in a shared HPC environment.")
(license l:agpl3+))))
-
-(define-public r-miniui
- (package
- (name "r-miniui")
- (version "0.1.1.1")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "miniUI" version))
- (sha256
- (base32
- "1h5h2sc57h95d6bsgs95l26911g38hvjc1v50bc31xl9689l2as5"))))
- (properties `((upstream-name . "miniUI")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-htmltools" ,r-htmltools)
- ("r-shiny" ,r-shiny)))
- (home-page "https://cran.r-project.org/web/packages/miniUI/";)
- (synopsis "Shiny UI widgets for small screens")
- (description
- "This package provides UI widget and layout functions for writing Shiny
apps that
-work well on small screens.")
- (license l:gpl3)))