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branch master updated (f7618bf -> f8ee22f)
From: |
Ricardo Wurmus |
Subject: |
branch master updated (f7618bf -> f8ee22f) |
Date: |
Sun, 21 Oct 2018 17:06:56 -0400 (EDT) |
rekado pushed a change to branch master
in repository guix.
from f7618bf gnu: linux-libre: Update to 4.18.16.
new 9a6808e gnu: tophat: Update to 2.1.1.
new 1d18ee6 gnu: bwa-pssm: Fetch from git.
new 2ba2d62 gnu: python2-bx-python: Update to 0.8.2.
new f5cec00 gnu: Add python-bx-python.
new 8640f9e gnu: python-twobitreader: Update to 3.1.6.
new 7321920 gnu: crossmap: Update to 0.2.9.
new a5b0038 gnu: Add python-dnaio.
new 6b7260b gnu: cutadapt: Update to 1.18.
new 6b31040 gnu: python-py2bit: Update to 0.3.0.
new 42643fc gnu: python-dendropy: Fetch from git.
new e6b65bd gnu: eolie: Update to 0.9.45.
new 4d494a4 gnu: deeptools: Update to 3.1.3.
new 7a1e62c gnu: delly: Update to 0.7.9.
new 1c06399 gnu: diamond: Fetch from git.
new 49b2e86 gnu: Add texlive-latex-doi.
new 893fbf1 gnu: Add texlive-generic-listofitems.
new 1d0669f gnu: Add texlive-latex-readarray.
new f50f343 gnu: Add texlive-latex-verbatimbox.
new 4348a05 gnu: Add texlive-latex-examplep.
new 5748fe5 gnu: discrover: Fetch from git.
new 949fa34 gnu: eigensoft: Update to 7.2.1.
new c96ca68 gnu: edirect: Update to 10.2.20181018.
new 38622cc gnu: express-beta-diversity: Update to 1.0.8.
new 0db75f7 gnu: fasttree: Use INVOKE.
new 50e33c3 gnu: python-screed: Update to 1.0.
new 4b8f453 gnu: khmer: Update to 2.1.2.
new 4d93a9a gnu: seqan: Update to 2.4.0.
new f8ee22f gnu: flexbar: Update to 3.4.0.
The 28 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
gnu/local.mk | 3 -
gnu/packages/bioinformatics.scm | 658 +++++++++++----------
gnu/packages/gnome.scm | 6 +-
.../patches/crossmap-allow-system-pysam.patch | 121 ----
.../patches/delly-use-system-libraries.patch | 56 --
.../patches/tophat-build-with-later-seqan.patch | 24 -
gnu/packages/tex.scm | 191 +++++-
7 files changed, 534 insertions(+), 525 deletions(-)
delete mode 100644 gnu/packages/patches/crossmap-allow-system-pysam.patch
delete mode 100644 gnu/packages/patches/delly-use-system-libraries.patch
delete mode 100644 gnu/packages/patches/tophat-build-with-later-seqan.patch
- branch master updated (f7618bf -> f8ee22f),
Ricardo Wurmus <=
- 28/28: gnu: flexbar: Update to 3.4.0., Ricardo Wurmus, 2018/10/21
- 26/28: gnu: khmer: Update to 2.1.2., Ricardo Wurmus, 2018/10/21
- 22/28: gnu: edirect: Update to 10.2.20181018., Ricardo Wurmus, 2018/10/21
- 27/28: gnu: seqan: Update to 2.4.0., Ricardo Wurmus, 2018/10/21
- 24/28: gnu: fasttree: Use INVOKE., Ricardo Wurmus, 2018/10/21
- 23/28: gnu: express-beta-diversity: Update to 1.0.8., Ricardo Wurmus, 2018/10/21
- 20/28: gnu: discrover: Fetch from git., Ricardo Wurmus, 2018/10/21
- 17/28: gnu: Add texlive-latex-readarray., Ricardo Wurmus, 2018/10/21
- 18/28: gnu: Add texlive-latex-verbatimbox., Ricardo Wurmus, 2018/10/21
- 14/28: gnu: diamond: Fetch from git., Ricardo Wurmus, 2018/10/21