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01/09: gnu: Add bedtools-2.26.
From: |
Ricardo Wurmus |
Subject: |
01/09: gnu: Add bedtools-2.26. |
Date: |
Sat, 20 Oct 2018 17:40:10 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 129363b762ad235fe729fdce6c1120f143d0620f
Author: Ricardo Wurmus <address@hidden>
Date: Sat Oct 20 18:12:21 2018 +0200
gnu: Add bedtools-2.26.
* gnu/packages/bioinformatics.scm (bedtools-2.26): New variable.
---
gnu/packages/bioinformatics.scm | 14 ++++++++++++++
1 file changed, 14 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 91bb94c..c5abe67 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -453,6 +453,20 @@ BED, GFF/GTF, VCF.")
(find-files "bin" ".*")))
#t)))))))
+;; Needed for pybedtools.
+(define-public bedtools-2.26
+ (package (inherit bedtools)
+ (name "bedtools")
+ (version "2.26.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
"https://github.com/arq5x/bedtools2/releases/"
+ "download/v" version "/"
+ "bedtools-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0jhavwifnf7lmkb11h9y7dynr8d699h0rd2l52j1pfgircr2zwv5"))))))
+
(define-public ribotaper
(package
(name "ribotaper")
- branch master updated (bfa47f1 -> 21c8374), Ricardo Wurmus, 2018/10/20
- 03/09: gnu: clipper: Update to 1.2.1., Ricardo Wurmus, 2018/10/20
- 08/09: gnu: blast+: Use INVOKE and return #T unconditionally., Ricardo Wurmus, 2018/10/20
- 09/09: gnu: bowtie: Update to 2.3.4.3., Ricardo Wurmus, 2018/10/20
- 01/09: gnu: Add bedtools-2.26.,
Ricardo Wurmus <=
- 06/09: gnu: bedops: Use INVOKE., Ricardo Wurmus, 2018/10/20
- 04/09: gnu: aragorn: Use invoke and simplify., Ricardo Wurmus, 2018/10/20
- 02/09: gnu: python-pybedtools: Update to 0.7.10., Ricardo Wurmus, 2018/10/20
- 05/09: gnu: bamm: Fetch from git and use INVOKE., Ricardo Wurmus, 2018/10/20
- 07/09: gnu: bedops: Update to 2.4.35., Ricardo Wurmus, 2018/10/20