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06/07: gnu: deeptools: Update to 3.1.2.
From: |
Ricardo Wurmus |
Subject: |
06/07: gnu: deeptools: Update to 3.1.2. |
Date: |
Fri, 5 Oct 2018 03:22:10 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 8e72f0f3190443935c03264037c83099ed68445f
Author: Ricardo Wurmus <address@hidden>
Date: Thu Oct 4 21:34:16 2018 +0200
gnu: deeptools: Update to 3.1.2.
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2.
[source]: Fetch from git.
[arguments]: Delete reset-gzip-timestamps phase.
[inputs]: Add python-plotly.
---
gnu/packages/bioinformatics.scm | 21 ++++++++++++++-------
1 file changed, 14 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4c1739f..39c84bf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2006,18 +2006,25 @@ with Python.")
(define-public deeptools
(package
(name "deeptools")
- (version "2.5.1")
+ (version "3.1.2")
(source (origin
- (method url-fetch)
- (uri (string-append "https://github.com/deeptools/deepTools/"
- "archive/" version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/deeptools/deepTools.git")
+ (commit version)))
+ (file-name (git-file-name name version))
(sha256
(base32
- "1q8i12l2gvk4n2s8lhyzwhh9g4qbc8lrk5l7maz00yvd5g6z5540"))))
+ "06fdpp6cg3xiwryxjhixvfysl4z0ps1crjgia587qa9ikqpsa7fd"))))
(build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; This phase fails, but it's not needed.
+ (delete 'reset-gzip-timestamps))))
(inputs
- `(("python-scipy" ,python-scipy)
+ `(("python-plotly" ,python-plotly)
+ ("python-scipy" ,python-scipy)
("python-numpy" ,python-numpy)
("python-numpydoc" ,python-numpydoc)
("python-matplotlib" ,python-matplotlib)
- branch master updated (4a5e2a9 -> a679821), Ricardo Wurmus, 2018/10/05
- 01/07: gnu: htslib: Update to 1.9., Ricardo Wurmus, 2018/10/05
- 02/07: gnu: samtools: Update to 1.9., Ricardo Wurmus, 2018/10/05
- 03/07: gnu: bcftools: Update to 1.9., Ricardo Wurmus, 2018/10/05
- 07/07: gnu: samtools-0.1: Adjust to match changes in samtools., Ricardo Wurmus, 2018/10/05
- 06/07: gnu: deeptools: Update to 3.1.2.,
Ricardo Wurmus <=
- 04/07: gnu: python-plotly: Add python-pandas to inputs., Ricardo Wurmus, 2018/10/05
- 05/07: gnu: python-pysam: Update to 0.15.1., Ricardo Wurmus, 2018/10/05