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branch core-updates updated (36e8185 -> ecd1301)
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From: |
Leo Famulari |
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Subject: |
branch core-updates updated (36e8185 -> ecd1301) |
|
Date: |
Thu, 13 Sep 2018 13:35:08 -0400 (EDT) |
lfam pushed a change to branch core-updates
in repository guix.
from 36e8185 gnu: lv2: Use Python 2 for building.
adds de15ff1 gnu: Add asignify.
adds d930374 gnu: youtube-dl: Update to 2018.08.04.
adds 19de827 services: tailon: Move to (gnu services web).
adds 8131707 services: hpcguix-web: Produce a log file and rotate it.
adds 94b3b60 gnu: hpcguix-web: Update to 53e09ea.
adds 57d70db gnu: Add yad.
adds f6c8a97 gnu: spectrwm: Update to 3.2.0.
adds 419aa05 gnu: tinyproxy: Update to 1.10.0.
adds 82d5c7c gnu: python-typing: Update to 3.6.6.
adds fc62567 gnu: Add python-dill.
adds 943a4cb gnu: Add python-multiprocess.
adds 7cd51cd gnu: Add python-toolz.
adds 098cb1e gnu: Add python-cytoolz.
adds 3d352cb gnu: Add python-sortedcontainers.
adds 930ba31 gnu: Add python-cloudpickle.
adds b2b8226 gnu: Add python-locket.
adds c27a9d8 gnu: Add python-blosc.
adds 035989c gnu: Add python-partd.
adds a6a7156 gnu: Add python-dask.
adds a9d496b gnu: Add python-intervaltree.
adds 1f41f01 gnu: Add python-pypairix.
adds 80f4db9 gnu: Add python-pyfaidx.
adds 5bb9e0a gnu: Add python-cooler.
adds 1189c7f gnu: Add python-hicexplorer.
adds 5bfa751 gnu: Add python-pygenometracks.
adds 5d78cf0 gnu: emacs-bui: Update to 1.2.0.
adds fdf68c2 gnu: emacs-build-farm: Update to 0.2.1.
adds 8a8662d gnu: emacs-guix: Update to 0.5.
adds f812132 syscalls: Report lack of a libc symbol as ENOSYS.
adds 7d05868 substitute: Ignore exceptions thrown by 'set-thread-name'.
adds f80d6ea gnu: Add hstr.
adds 633e8aa gnu: ldc: Update to 1.10.0.
adds 98d6543 gnu: Rename ldc.scm to dlang.scm.
adds 1f7fe26 gnu: python-sockjs-tornado: Edit synopsis & description.
adds 83397e0 gnu: python-sockjs-tornado: Update to 1.0.5.
adds 7c8b1bf gnu: python-genshi: Update to 0.7.1.
adds 37a2ea1 gnu: fortify-headers: Update to 1.0.
adds 98184e5 gnu: gnome-mpv: Update to 0.15.
adds d7e9bd1 gnu: address@hidden: Update to 4.4.155.
adds 176999f gnu: address@hidden: Update to 4.9.126.
adds c727ed0 gnu: address@hidden: Update to 4.14.69.
adds eb07a6f gnu: linux-libre: Update to 4.18.7.
adds 254844f gnu: nano: Update to 3.0.
adds 2424d5e gnu: cloc: Update source hash.
adds 8fe059b gnu: python-cryptography: Update to 2.3.1.
adds ba0052e gnu: python-tlsh: Update to 3.4.5.
adds 418ec0a gnu: python-libarchive-c: Update to 2.8.
adds fc44940 gnu: python-debian: Update home page.
adds c5e4b4c gnu: Add libabigail.
adds 875d068 Adjust all users of (gnu packages ldc) to use (gnu
packages dlang).
adds d56eee8 gnu: qtractor: Update to 0.9.2.
adds 7a6eaf5 gnu: python-parso: Update to 0.3.1.
adds cc12ac5 gnu: python-jedi: Update to 0.12.1.
adds c0ea7f5 gnu: python-parse: Mark up description.
adds 86788cb gnu: python-parse: Update to 1.8.4.
adds 4b41568 gnu: python-binaryornot: Update to 0.4.4.
adds 695775b gnu: kakoune: Update to 2018.09.04.
adds 4105f13 gnu: tor: Update to 0.3.4.8.
adds b388270 gnu: mcrl2: Use HTTPS home page.
adds 2740549 gnu: kakoune: Use HTTPS home page.
adds 029de52 gnu: guitarix-lv2: Use correct configure flag.
adds d54145c gnu: guitarix: Update to 0.37.3.
adds 2f195b6 gnu: Add r-mosaicdata.
adds 6c6ce2d gnu: Add r-mosaic.
adds cbb0edd gnu: Add r-abd.
adds 2225d56 profiles: Correctly deal with etc/ being a relative
symlink.
adds 5d9c28f gnu: git: Update to 2.19.0.
adds 091ef8c gnu: VLC: Update to 3.0.4.
adds e76709f gnu: go-github-com-syncthing-notify: Update to
0.0.0-2.b76b458.
adds b4ff75b gnu: syncthing: Update to 0.14.50.
adds 41a659d gnu: usbredir: Update to 0.8.0.
adds f6b7ccc gnu: spice: Update to 0.14.1 [fixes CVE-2018-10873].
adds 01af264 gnu: Add r-svgui.
adds 828fa94 gnu: guile-simple-zmq, jupyter-guile-kernel: Update to
5bb66a0 and a7db924.
adds 8539eb5 gnu: jupyter-guile-kernel: Add dependencies to the search
path.
adds d2fe71b gnu: Add emacs-irony-mode.
adds aa82260 gnu: arpack-ng-openmpi: Fix build.
adds aeba7d4 gnu: Add libnumbertext.
adds 52b0a35 gnu: libreoffice: Update to 6.1.0.3.
adds 702a87f gnu: perl-dbd-mysql: Update to 4.047.
adds cd1e138 gnu: unbound: Update to 1.8.0.
adds a93de1a gnu: obnam: Add deprecation warning.
adds 9b83c15 gnu: snakemake: Update to 5.2.2.
adds a855117 gnu: snakemake: Update home page.
adds 4a67079 gnu: mes: Oops, use mirror://gnu download url.
adds f72e5f9 ui: Do not filter hash mismatch lines.
adds 1afd1fb guix: Do not close current-error-port.
adds 475e165 gnu: emacs-helm-system-packages: Update to 1.10.1.
adds ac9e307 gnu: emacs-magit-todos: Update to 1.1.
adds bd8f74d gnu: emacs-evil-collection: Update to 20180911.
adds ee0d184 gnu: Add emacs-hackernews.
adds 2b0820b gnu: emacs-helm: Update to 3.0.
adds 5882078 font-fantasque-sans: Upgrade to 1.7.2.
adds bbe46a4 mpi: Factorize openmpi setup build phase.
adds 50b3b83 netsurf: Register patch.
adds b2c8d31 gnu: perl-moosex-getopt: Update to 0.73.
adds c8749b0 gnu: Add perl-mock-config.
adds 4dbef67 gnu: zsh: Use HTTPS.
adds 5a5d3e3 gnu: zsh: Update to 5.6.1.
adds 60d8db7 gnu: syslinux: Use INVOKE.
adds 0f304ba gnu: syslinux: Use HTTPS home page.
adds bec13d8 gnu: sg3-utils: Update to 1.43.
adds acd4da3 gnu: libfilezilla: Update to 0.13.1.
adds 9c208f3 gnu: Add emacs-youtube-dl.
adds 320105e gnu: Add emacs-org-web-tools.
adds b002809 gnu: Add emacs-blimp.
adds 4a89bdd gnu: python-scikit-learn: Update to 0.19.2.
adds 4fa7f29 gnu: emacs-hl-todo: Update to 1.9.0.
adds ff9008d gnu: Zsh: Remove workaround required for Zsh 5.6.
adds f006237 gnu: gnurl: Update to 7.61.1.
adds 0bcd1bc gnu: address@hidden: Use match-lambda directly.
adds 5a3fcf5 gnu: address@hidden: Install rustdoc.
adds 3763e77 gnu: address@hidden: Remove superfluous install-file call.
adds aed0a59 git-download: Rewrite 'git-predicate' using Guile-Git.
adds 614cfd5 gnu: Add address@hidden
adds 4bd8f4f gnu: python-jedi: Update to 0.12.1.
adds 7e846d0 gnu: Add python-toml.
adds 8795ce8 gnu: Add python-black.
adds aaf10fa gnu: Add emacs-el-x.
adds 563f151 gnu: Add emacs-mocker.
adds 2c6ff3a gnu: Add emacs-find-file-in-project.
adds 87e9fb5 gnu: Add emacs-pyvenv.
adds dcc31d7 gnu: Add emacs-highlight-indentation.
adds 82baeea gnu: Add emacs-elpy.
adds f309671 gnu: Add emacs-org-reveal.
adds 333c0ca gnu: address@hidden: Use address@hidden as template.
adds bfdc0e4 gnu: rust: Move "cc" from rust-bootstrap to rust proper.
adds e69b1a7 gnu: rust-bootstrap: Clean up comments.
adds 05ebff9 gnu: Add address@hidden
adds 1ab3e1d gnu: Add address@hidden
adds 73dc783 gnu: address@hidden: Replace "default-ar" by "ar".
adds 88bfabf hydra: Add support for manifests.
adds 78c9058 build-self: Add a dummy (git) module to
'compute-guix-derivation'.
adds ac4d2ec build-self: Emit a useful message upon error.
adds 26700ca gnu: racket: Fix incompatibility with libedit.
adds d1ca3d7 gnu: Add r-svdialogs.
adds 3cadd3c gnu: Add r-abe.
adds 6fe73b4 gnu: rust: Accept more detailed gdb responses.
adds b78fe27 gnu: address@hidden: Disable pedantic test.
adds 060366f gnu: address@hidden: Inherit outputs.
adds fade67a gnu: retroarch: Use shared zlib.
adds f21967a gnu: retroarch: Fix building on armhf-linux.
adds ef26400 gnu: Add r-abf2.
adds 38dc3d6 gnu: libinput: Update to 1.12.0.
adds ae72b8f gnu: Add ClusterShell.
adds 1efcd0f gnu: Add r-abhgenotyper.
adds ebb3cdb gnu: Add r-abjutils.
adds 7d1cc61 Revert "gnu: libinput: Update to 1.12.0."
new d763940 Merge branch 'master' into core-updates
new ecd1301 gnu: libinput: Update to 1.12.0.
The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
build-aux/build-self.scm | 20 +-
build-aux/hydra/gnu-system.scm | 35 ++
doc/guix.texi | 56 ++-
gnu/local.mk | 13 +-
gnu/packages/audio.scm | 7 +-
gnu/packages/backup.scm | 15 +-
gnu/packages/bioinformatics.scm | 197 +++++++-
gnu/packages/bootloaders.scm | 6 +-
gnu/packages/code.scm | 2 +-
gnu/packages/cran.scm | 233 +++++++++
gnu/packages/crypto.scm | 38 ++
gnu/packages/databases.scm | 22 +-
gnu/packages/{ldc.scm => dlang.scm} | 28 +-
gnu/packages/dns.scm | 4 +-
gnu/packages/elf.scm | 72 ++-
gnu/packages/emacs.scm | 558 ++++++++++++++++++---
gnu/packages/emulators.scm | 19 +-
gnu/packages/fonts.scm | 36 +-
gnu/packages/freedesktop.scm | 4 +-
gnu/packages/ftp.scm | 4 +-
gnu/packages/gnunet.scm | 4 +-
gnu/packages/gtk.scm | 43 ++
gnu/packages/guile.scm | 47 +-
gnu/packages/libreoffice.scm | 54 +-
gnu/packages/linux.scm | 16 +-
gnu/packages/machine-learning.scm | 49 +-
gnu/packages/maths.scm | 100 +---
gnu/packages/mes.scm | 2 +-
gnu/packages/mpi.scm | 14 +-
gnu/packages/music.scm | 17 +-
gnu/packages/nano.scm | 4 +-
.../patches/ldc-1.7.0-disable-phobos-tests.patch | 88 ----
.../patches/ldc-disable-phobos-tests.patch | 22 +
...hon-genshi-add-support-for-python-3.4-AST.patch | 151 ------
.../python-genshi-buildable-on-python-2.7.patch | 25 -
...hon-genshi-disable-speedups-on-python-3.3.patch | 32 --
.../python-genshi-fix-tests-on-python-3.5.patch | 112 -----
.../patches/python-genshi-isstring-helper.patch | 37 --
...on-genshi-stripping-of-unsafe-script-tags.patch | 51 --
.../rust-1.25-accept-more-detailed-gdb-lines.patch | 94 ++++
gnu/packages/perl-check.scm | 21 +
gnu/packages/perl.scm | 9 +-
gnu/packages/python-crypto.scm | 8 +-
gnu/packages/python-web.scm | 41 +-
gnu/packages/python.scm | 389 +++++++++++++-
gnu/packages/rust.scm | 245 +++++----
gnu/packages/scheme.scm | 7 +-
gnu/packages/scsi.scm | 16 +-
gnu/packages/shells.scm | 23 +-
gnu/packages/shellutils.scm | 47 ++
gnu/packages/spice.scm | 96 ++--
gnu/packages/ssh.scm | 41 ++
gnu/packages/suckless.scm | 8 +-
gnu/packages/syncthing.scm | 10 +-
gnu/packages/text-editors.scm | 6 +-
gnu/packages/tor.scm | 6 +-
gnu/packages/version-control.scm | 15 +-
gnu/packages/video.scm | 12 +-
gnu/packages/web.scm | 13 +-
gnu/packages/wm.scm | 14 +-
gnu/services/admin.scm | 174 +------
gnu/services/web.scm | 188 ++++++-
gnu/tests/admin.scm | 127 -----
gnu/tests/web.scm | 99 +++-
guix/build-system/dub.scm | 4 +-
guix/build/profiles.scm | 15 +-
guix/build/syscalls.scm | 4 +-
guix/git-download.scm | 119 ++---
guix/scripts/build.scm | 8 +-
guix/scripts/package.scm | 3 +-
guix/scripts/substitute.scm | 5 +-
guix/ui.scm | 26 +-
tests/profiles.scm | 36 ++
73 files changed, 2677 insertions(+), 1489 deletions(-)
rename gnu/packages/{ldc.scm => dlang.scm} (93%)
delete mode 100644 gnu/packages/patches/ldc-1.7.0-disable-phobos-tests.patch
create mode 100644 gnu/packages/patches/ldc-disable-phobos-tests.patch
delete mode 100644
gnu/packages/patches/python-genshi-add-support-for-python-3.4-AST.patch
delete mode 100644
gnu/packages/patches/python-genshi-buildable-on-python-2.7.patch
delete mode 100644
gnu/packages/patches/python-genshi-disable-speedups-on-python-3.3.patch
delete mode 100644
gnu/packages/patches/python-genshi-fix-tests-on-python-3.5.patch
delete mode 100644 gnu/packages/patches/python-genshi-isstring-helper.patch
delete mode 100644
gnu/packages/patches/python-genshi-stripping-of-unsafe-script-tags.patch
create mode 100644
gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch
delete mode 100644 gnu/tests/admin.scm
- branch core-updates updated (36e8185 -> ecd1301),
Leo Famulari <=