13/16: gnu: Add python-pyfaidx.

[Ricardo Wurmus]

rekado pushed a commit to branch master
in repository guix.

commit 80f4db91b17ff5d82260c9194ec09a408f854455
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Sep 5 16:00:03 2018 +0200

    gnu: Add python-pyfaidx.
    
    * gnu/packages/bioinformatics.scm (python-pyfaidx): New variable.
---
 gnu/packages/bioinformatics.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9b047c2..d66d9ef 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13556,3 +13556,25 @@ bound.")
      "Pypairix is a Python module for fast querying on a pairix-indexed
 bgzipped text file that contains a pair of genomic coordinates per line.")
     (license license:expat)))
+
+(define-public python-pyfaidx
+  (package
+    (name "python-pyfaidx")
+    (version "0.5.4.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pyfaidx" version))
+       (sha256
+        (base32
+         "0y5zyjksj1rdglj601xd2bbni5abhdh622y3ck76chyzxz9z4rx8"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-setuptools" ,python-setuptools)
+       ("python-six" ,python-six)))
+    (home-page "http://mattshirley.com";)
+    (synopsis "Random access to fasta subsequences")
+    (description
+     "This package provides procedures for efficient pythonic random access to
+fasta subsequences.")
+    (license license:bsd-3)))