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08/10: gnu: Add r-goseq.
From: |
Ricardo Wurmus |
Subject: |
08/10: gnu: Add r-goseq. |
Date: |
Thu, 5 Jul 2018 09:09:27 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 5da0e1428568be137054cb1fe220c28cd42f9eec
Author: Ricardo Wurmus <address@hidden>
Date: Wed Jul 4 17:44:47 2018 +0200
gnu: Add r-goseq.
* gnu/packages/bioconductor.scm (r-goseq): New variable.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 882e3e1..40ac1d2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -724,3 +724,29 @@ information and producing various plots and statistics.")
"This package provides tools for exporting and importing classification
trees and clusters to other programs.")
(license license:gpl2)))
+
+(define-public r-goseq
+ (package
+ (name "r-goseq")
+ (version "1.32.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "goseq" version))
+ (sha256
+ (base32
+ "0xmbb8ma32lrfy810r82y34gkspq4fqiqxykic9j4rq9rg9n9x2l"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biasedurn" ,r-biasedurn)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-genelendatabase" ,r-genelendatabase)
+ ("r-go-db" ,r-go-db)
+ ("r-mgcv" ,r-mgcv)))
+ (home-page "https://bioconductor.org/packages/goseq/")
+ (synopsis "Gene Ontology analyser for RNA-seq and other length biased
data")
+ (description
+ "This package provides tools to detect Gene Ontology and/or other user
+defined categories which are over/under represented in RNA-seq data.")
+ (license license:lgpl2.0+)))
- branch master updated (0a562e4 -> aa388dc), Ricardo Wurmus, 2018/07/05
- 01/10: gnu: Add r-biasedurn., Ricardo Wurmus, 2018/07/05
- 07/10: gnu: Add r-ctc., Ricardo Wurmus, 2018/07/05
- 05/10: gnu: Add r-argparse., Ricardo Wurmus, 2018/07/05
- 06/10: gnu: Add r-genelendatabase., Ricardo Wurmus, 2018/07/05
- 08/10: gnu: Add r-goseq.,
Ricardo Wurmus <=
- 03/10: gnu: r-getopt: Move from bioinformatics to cran., Ricardo Wurmus, 2018/07/05
- 10/10: gnu: Add r-rots., Ricardo Wurmus, 2018/07/05
- 04/10: gnu: Add r-findpython., Ricardo Wurmus, 2018/07/05
- 02/10: gnu: Add r-goplot., Ricardo Wurmus, 2018/07/05
- 09/10: gnu: Add r-glimma., Ricardo Wurmus, 2018/07/05