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54/55: gnu: r-seurat: Update to 2.3.0.
From: |
Ricardo Wurmus |
Subject: |
54/55: gnu: r-seurat: Update to 2.3.0. |
Date: |
Sat, 21 Apr 2018 17:08:25 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit c36ce4763550deb521009ed3c5e83911e4e85005
Author: Ricardo Wurmus <address@hidden>
Date: Sat Apr 21 22:25:50 2018 +0200
gnu: r-seurat: Update to 2.3.0.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.0.
[propagated-inputs]: Add r-cluster, r-dosnow, r-fitdistrplus, r-foreach,
r-lmtest, r-png, and r-rann.
---
gnu/packages/bioinformatics.scm | 11 +++++++++--
1 file changed, 9 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a000d9d..a060139 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9638,13 +9638,13 @@ and irregular enzymatic cleavages, mass measurement
accuracy, etc.")
(define-public r-seurat
(package
(name "r-seurat")
- (version "2.2.1")
+ (version "2.3.0")
(source (origin
(method url-fetch)
(uri (cran-uri "Seurat" version))
(sha256
(base32
- "1sr82nf38hq07avrfn8vlrzjq7dfm4pcr8l1nh6mnglcql2bk9z2"))
+ "0kp3lw1s896zkjd6x2wp8qcg7wnm5b40g8vihps13f1m7j4nx7r0"))
;; Delete pre-built jar.
(snippet
'(begin (delete-file "inst/java/ModularityOptimizer.jar")
@@ -9674,11 +9674,15 @@ Main-Class: ModularityOptimizer\n")))
(propagated-inputs
`(("r-ape" ,r-ape)
("r-caret" ,r-caret)
+ ("r-cluster" ,r-cluster)
("r-cowplot" ,r-cowplot)
("r-diffusionmap" ,r-diffusionmap)
+ ("r-dosnow" ,r-dosnow)
("r-dplyr" ,r-dplyr)
("r-dtw" ,r-dtw)
+ ("r-fitdistrplus" ,r-fitdistrplus)
("r-fnn" ,r-fnn)
+ ("r-foreach" ,r-foreach)
("r-fpc" ,r-fpc)
("r-gdata" ,r-gdata)
("r-ggplot2" ,r-ggplot2)
@@ -9690,13 +9694,16 @@ Main-Class: ModularityOptimizer\n")))
("r-igraph" ,r-igraph)
("r-irlba" ,r-irlba)
("r-lars" ,r-lars)
+ ("r-lmtest" ,r-lmtest)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
("r-metap" ,r-metap)
("r-mixtools" ,r-mixtools)
("r-pbapply" ,r-pbapply)
("r-plotly" ,r-plotly)
+ ("r-png" ,r-png)
("r-ranger" ,r-ranger)
+ ("r-rann" ,r-rann)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rcpp" ,r-rcpp)
("r-rcppeigen" ,r-rcppeigen)
- 40/55: gnu: Add r-cardata., (continued)
- 40/55: gnu: Add r-cardata., Ricardo Wurmus, 2018/04/21
- 43/55: gnu: r-ddalpha: Update to 1.3.2., Ricardo Wurmus, 2018/04/21
- 44/55: gnu: r-ggridges: Update to 0.5.0., Ricardo Wurmus, 2018/04/21
- 55/55: gnu: r-httpuv: Update to 1.4.1., Ricardo Wurmus, 2018/04/21
- 48/55: gnu: r-car: Update to 3.0-0., Ricardo Wurmus, 2018/04/21
- 42/55: gnu: Add r-geometry., Ricardo Wurmus, 2018/04/21
- 46/55: gnu: Add r-rio., Ricardo Wurmus, 2018/04/21
- 25/55: gnu: r-readxl: Update to 1.1.0., Ricardo Wurmus, 2018/04/21
- 28/55: gnu: r-bindr: Update to 0.1.1., Ricardo Wurmus, 2018/04/21
- 33/55: gnu: r-prodlim: Update to 2018.04.18., Ricardo Wurmus, 2018/04/21
- 54/55: gnu: r-seurat: Update to 2.3.0.,
Ricardo Wurmus <=
- 47/55: gnu: Add r-maptools., Ricardo Wurmus, 2018/04/21
- 52/55: gnu: r-lambda-r: Update to 1.2.2., Ricardo Wurmus, 2018/04/21
- 29/55: gnu: r-bindrcpp: Update to 0.2.2., Ricardo Wurmus, 2018/04/21
- 45/55: gnu: Add r-openxlsx., Ricardo Wurmus, 2018/04/21
- 50/55: gnu: Add r-promises., Ricardo Wurmus, 2018/04/21