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branch core-updates updated (12cb6c3 -> 5576cfa)
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From: |
Marius Bakke |
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Subject: |
branch core-updates updated (12cb6c3 -> 5576cfa) |
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Date: |
Thu, 29 Mar 2018 11:41:23 -0400 (EDT) |
mbakke pushed a change to branch core-updates
in repository guix.
from 12cb6c3 gnu: cmake: Update to 3.11.0.
adds 576e0ae gnu: rofi: Update source hash.
adds 8c4bd04 gnu: python-ptyprocess: Update source URL.
adds 385e861 gnu: Add python-logwrap.
adds d7a11f1 gnu: pigx-chipseq: Update to 0.0.9.
adds ef8b9a7 gnu: r-spams: Use predictable source URI.
adds 7d15cf1 gnu: gmp-ecm: Update to 7.0.4.
adds b5df3e2 gnu: leocad: Update to 18.02.
adds 84775d6 gnu: leocad: Update phase style.
adds 324f192 gnu: leocad: Use HTTPS home page.
adds 8abbe5d gnu: coq-flocq: Update phase style.
adds 8023f0f gnu: gparted: Update to 0.31.0.
adds af23710 gnu: util-linux: Fix CVE-2018-7738 without grafting.
adds db6609b gnu: texlive-fonts-amsfonts: Make build reproducible.
adds 0def912 gnu: libosinfo: Fix URL for usb.ids.
adds 363ee7a gnu: pigx-chipseq: Update to 0.0.10.
adds ab68cbf gnu: rawtherapee: Update to 5.4.
adds 0d73f14 gnu: libosinfo: Update usb.ids.
adds e2f9847 gnu: Add tinyscheme.
adds 4102588 gnu: mpd: Update to 0.20.18.
adds b87c76d Fix copyright notice for Nils Gillmann.
adds 2fa6f63 gnu: emacs-clojure-mode: Update to 5.6.1.
adds 4dd0f8c gnu: emacs-deferred: Update to 0.5.1.
adds 8ec89c3 gnu: address@hidden: Update to 4.14.29.
adds 4d7c5f6 gnu: linux-libre: Update to 4.15.12.
adds 7fe1432 services: rottlog: Add /var/log/debug to
'%default-rotations'.
adds ca5b731 gnu: shepherd: Update to 0.4.0.
adds b75e1df doc: Add index entries for realtime and jackd in the
manual.
adds 7624300 gnu: Add boost-sync.
adds 6f976d2 gnu: yaml-cpp: Update to 0.6.1.
adds 247384d gnu: Add supercollider.
adds c1cd155 publish: Add test for non-GET queries.
adds 04d2a16 publish: Always build a new derivation for the
"/log/NAME" test.
adds 5da2a93 gnu: python-cryptography: Update to 2.2.1.
adds cbcbb10 gnu: certbot: Update to 0.22.2.
adds 0e4d067 gnu: talloc: Update to 2.1.12.
adds 069d0b7 gnu: nmap: Update to 7.70.
adds 63c295d gnu: nginx: Update to 1.13.10.
adds 618050a gnu: r-bookdown: Do not propagate ghc-pandoc.
adds 10e2ee7 gnu: darktable: Update to 2.4.2.
adds 5e56dfa gnu: krita: Update to 4.0.0.
adds 282e48e gnu: node: Update to 9.9.0.
adds ec40a05 gnu: Add lyx.
adds b06e94d gnu: address@hidden: Update to 4.4.123.
adds 77f2ced gnu: address@hidden: Update to 4.9.89.
adds dd8237b gnu: coq-flocq: Use predictable source URI.
adds ee789a4 gnu: parallel: Update to 20180322.
adds cd4c603 gnu: fribidi: Update to 1.0.2.
adds b1be07c gnu: libgee: Update to 0.20.1.
adds 7aff5d0 gnu: git: Update to 2.16.3.
adds 1ae1603 gexp: 'gexp->script' and 'gexp->file' have a new
#:module-path parameter.
adds 427ec19 gexp: 'program-file' has a new #:module-path parameter.
adds 03e1cca doc: Move Cgit Service documentation to the Version
Control section.
adds 2cac889 gnu: java-aqute-bnd-annotation: Update to 3.5.0.
adds 116c12a gnu: Keep Krita 3 along with Krita 4.
adds 24fa6bc gnu: Add r-catdap.
adds 272c070 tests: Add tests for "guix pack".
adds af81311 vm: Allow control of deduplication in
root-partition-initializer.
adds 8c9bf29 gnu: When building in a VM, share a temporary directory.
adds 1c2ac6b guix: Rewrite build-docker-image to allow more paths.
adds a335f6f system: Add "guix system docker-image" command.
adds 8e88f6f tests: Add tests for "guix system disk-image" et al.
adds bba66e7 gnu: streamlink: Update to 0.11.0.
adds 1f849cb gnu: dunst: Update to 1.3.1.
adds d591989 gnu: tvtime: Fix build.
adds e9252fd gnu: make-arm-trusted-firmware: New procedure.
adds ecff374 gnu: arm-trusted-firmware-pine64-plus: New variable.
adds 9a1c4a6 gnu: make-u-boot-package: Install 'itb' and 'dtb' files
also.
adds 29be6cf gnu: Add u-boot-pine64-plus.
adds 15b8b5d gnu: sablevm-classpath: Remove unnecessary inputs.
adds f15e2ee gnu: sablevm: Use a different GC implementation.
adds 4d4a569 gnu: sablevm: Do not change GC, just disable stripping.
adds c91e0f1 gnu: cuirass: Update to 326264c.
adds 4debffa maint: Adjust 'check-final-inputs-self-contained' for
glibc:static.
adds e087dad gnu: less: Update to 530.
adds 11e0189 doc: Fix typo.
adds 929e2d9 gnu: links: Update to 2.15.
adds eb762cc gnu: perl-www-mechanize: Update to 1.88.
adds 5660325 gnu: autossh: Update to 1.4f.
adds 810cd03 gnu: emacs-mmm-mode: Update to 0.5.5.
adds 749d800 gnu: perl-text-simpletable: Update to 2.04.
adds 904c3a4 gnu: r-annotate: Update to 1.56.2.
adds 4349f3d gnu: yoshimi: Update to 1.5.7.
adds 4fbcc21 gnu: python-gitpython: Update to 2.1.1.9.
adds e0bee0d gnu: ceres-solver: Update to 1.14.0.
adds faf44e3 gnu: neomutt: Update to 20180323.
adds 491883a gnu: aisleriot: Update to 3.22.5.
adds 3682857 gnu: gnome-klotski: Update to 3.22.3.
adds 1a52206 gnu: python-ly: Use PYPI-URI.
adds ef82b71 gnu: hunspell: Update to 1.6.2.
adds 1635cb5 gnu: hunspell: Use INVOKE.
adds 4541072 gnu: libstrophe: Update to 0.9.2.
adds c7da851 gnu: gnome-autoar: Update to 0.2.3.
adds 4bd76ea gnu: python-graphviz: Update to 0.8.2.
adds a2b9cfa gnu: clutter-gst: Update to 3.0.26.
adds a26040c gnu: ruby-ffi: Update to 1.9.23.
adds d4297f7 gnu: gexiv2: Update to 0.10.8.
adds c77fb2d gnu: libdvdcss: Update to 1.4.2.
adds be828bc gnu: clisp: Remove ineffective 'remove-timestamp' phase.
adds 4bd2e2a gnu: clisp: Update license.
adds cd49e47 gnu: gtkspell3: Add enchant.
adds 1679923 gnu: Add pan.
adds 6cf2ac3 gnu: Add pure.
adds c35d983 gnu: fc-host-tools: Update to version 8.
adds a4e7215 gnu: Add python2-ipy.
adds 9b36e3b gnu: Add python-parted.
adds 7112b2f gnu: openlibm: Update to 0.5.5.
adds 883fa31 gnu: python-pyld: Update to 1.0.3.
adds 326654e gnu: flashrom: Support libusb versions >1.0.21.
adds 5b367a1 gnu: hlint: Update to 2.1.1.
adds 5a5b866 gnu: filezilla: Update to 3.31.0.
adds bbc55a7 gnu: mate-themes: Update to 3.22.15.
adds 1dc3109 gnu: scotch: Use predictable source URI.
adds 58ee8a9 gnu: libusb: Update to 1.0.22.
adds a667d20 gnu: libmtp: Update to 1.1.15.
adds 45f762e gnu: Add classpath-bootstrap.
adds 063629a gnu: Add jamvm-1-bootstrap.
adds aa43238 gnu: ant-bootstrap: Build with JamVM 1.5.1.
adds ff4d9fd gnu: ant-bootstrap: Update to 1.8.4.
adds 6c775dc gnu: ecj-bootstrap: Build with JamVM 1.5.1 and jikes.
adds c4f06c1 gnu: ecj-javac-wrapper: Do not use sablevm.
adds 8778da0 gnu: Replace classpath-on-sablevm with classpath-0.99.
adds 58d2b13 gnu: Remove jamvm-bootstrap.
adds c98d7a6 gnu: classpath-jamvm-wrappers: Use classpath-0.99.
adds b5a0d42 gnu: Remove ecj-javac-on-jamvm-wrapper.
adds 269fb7d gnu: Remove sablevm and sablevm-classpath, update
comments.
adds 171e84d gnu: httpd: Update to 2.4.33 [security fixes].
adds 7240b4a gnu: newsboat: Update to 2.11.
adds d4fd4c3 gnu: ant-bootstrap: Make build more reliable.
adds ae0a5a7 gnu: ecj-javac-wrapper: Run JamVM with conservative
options.
adds dfca241 git: 'latest-repository-commit' calls 'repository-close!'.
adds ce59640 gnu: address@hidden: Update to 1.11.9.
adds 40e3a19 gnu: classpath-jamvm-wrappers: Run JamVM with
conservative options.
adds 51602aa gnu: ecj-javac-wrapper: Fix reference to glibj and
tools.zip.
adds 07a049c gnu: usbredir: Build without '-Werror'.
adds 66eb91b gnu: pius: Update to 2.2.6.
adds 6ae0fd2 gnu: emacs-flycheck: Update to 31.
adds e784e25 gnu: geeqie: Update to 1.4.
adds 7d85fcd guix build: 'guix build --log-file' gracefully reports
certificate errors.
adds 7ebe7d8 gnu: address@hidden: Update to 4.4.124.
adds af55816 gnu: address@hidden: Update to 4.9.90.
adds 27d528d gnu: address@hidden: Update to 4.14.30.
adds 5dc8f5d gnu: linux-libre: Update to 4.15.13.
adds bab9793 gnu: classpath: Add aarch64-linux support.
adds d2c0365 gnu: address@hidden: Update to 2.0.1.
adds 3239913 gnu: address@hidden: Update to 1.11.10.
adds a271096 gnu: evince: Update to 3.28.0.
adds 5ccd8f4 gnu: magit-svn: Update to 2.2.0.
adds 3c1ae2a gnu: perl-image-exiftool: Update to 10.80.
adds 0741932 gnu: libressl: Update to 2.7.1.
adds aaa31d1 gnu: emacs-xelb: Update to 0.14.
adds 9f2a58a gnu: emacs-exwm: Update to 0.18.
adds 03a34d5 gnu: emacs-exwm-x: Update to 1.8.1.
adds da5fe92 gnu: Add ghc-basement.
adds 635cc8f gnu: Add ghc-foundation.
adds 150e8e2 gnu: ghc-memory: Update to 0.14.16.
adds 5b5dbec gnu: ghc-cryptonite: Update to 0.25.
adds 158943f gnu: emacs-minitest: Switch source to the git repository.
adds 376015c gnu: emacs-robe: Include the lib directory in the output.
adds 96e2236 gnu: Add r-arules.
adds d2a507e gnu: Add r-haven.
adds 9a91c92 gnu: Add r-modelr.
adds d7637e5 gnu: Add r-readxl.
adds 10487c3 gnu: Add r-callr.
adds 948740b gnu: Add r-reprex.
adds 81a9d4a gnu: Add r-selectr.
adds 8a1ef6a gnu: Add r-rvest.
adds 786d3de gnu: Add r-tidyverse.
adds e0de023 gnu: Add perl-uri-escape.
adds e5e5eb1 gnu: Add twitchy.
adds 196c8b3 gnu: translate-shell: Update to 0.9.6.7.
adds 4769ef0 gnu: Add font-lohit.
adds faef71f gnu: hplip: Update to 3.18.3.
adds 86bd0f7 gnu: libreoffice: Update to 5.4.6.2.
adds dadc861 gnu: vis: Update to 0.5.
adds 5000283 gnu: r-servr: Update to 0.9.
adds 917378f gnu: r-blob: Update to 1.1.1.
adds 6e54870 gnu: r-randomforest: Update to 4.6-14.
adds 65ff6ab gnu: python-django-crispy-forms: Update to 1.7.2.
adds ef803aa gnu: python-plotly: Update to 2.4.1.
adds 81a2217 gnu: ruby-asciidoctor: Update to 1.5.6.2.
adds d6fb32b gnu: ruby-rake: Update to 12.3.1.
adds 36f3e1d gnu: radeontop: Update to 1.1.
adds 814612c gnu: libkomparediff2: Update to 17.12.3.
adds 835cf37 gnu: jetring: Update to 0.27.
adds 8a70a23 gnu: ccache: Update to 3.4.2.
adds f649443 gnu: gzdoom: Update to 3.3.0.
adds 7565792 gnu: supercollider: Update to 3.9.2.
adds 473cd27 gnu: Remove Haskell packages provided by GHC.
adds 7ddd418 gnu: bootstrap: Remove unneeded import.
adds 82b71ac activation: Pass '-d HOME' to 'usermod'.
adds de00213 gnu: Remove unnecessary import.
adds b06a70e graph: Add "module" node type.
adds 8980eea guix gc: Add '--derivers'.
adds 0fc3af7 gnu: address@hidden: Update to 1.1.0h [security fixes].
adds 8960b2e gnu: lyx: Use HTTPS home page.
adds 15ff38f gnu: dovecot: Update to 2.3.1.
adds 75176f1 gnu: zstd: Update to 1.3.4.
adds f7a5cf7 nss: Remove '%compat' from the defaults.
adds 6fcb90e guix environment: load manifest files like "guix package"
does
adds 78ba71b gnu: alpine: Update to 2.21.999.
adds 5bd43f7 gnu: emacs-org, emacs-org-contrib: Update to 9.1.9.
adds 4d99a32 gnu: mupdf: Fix CVE-2018-{6544,1000051}.
adds 6ef66d3 gnu: icecat: Add fix for CVE-2018-5148.
adds 803b9e8 gnu: font-lato: Switch to font-build-system.
adds 15795e0 gnu: font-linuxlibertine: Switch to font-build-system.
adds 0328c51 gnu: culmus: Switch to font-build-system.
adds 733d66a gnu: culmus: Rename to font-culmus.
adds b3517f3 Add (guix ci).
adds 183445a weather: Report continuous integration stats.
adds c5e7bca build: Build (guix ci) and (guix scripts weather) when
HAVE_GUILE_JSON.
adds 910deec gnu: Add tcalc.
adds 3481c71 gnu: mu: Fix tests failures triggered by DST.
adds 1cde746 gnu: Add r-parsedate.
adds 590bdc1 gnu: openssl: Replace with OpenSSL 1.0.2o [fixes
CVE-2018-0739].
adds 935806b gnu: ntp: Update to 4.2.8p11 [security-fixes].
adds 4d96799 gnu: xf86-input-libinput: Update to 0.27.0.
adds 0a8985f gnu: xf86-video-ati: Update to 18.0.1.
adds b63af9b gnu: http-parser: Update to 2.8.0.
adds ce353a5 gnu: node: Update to 9.10.0.
adds 3cd4447 guix-install.sh: Explicitly set root's home directory.
adds 881c61d doc: Improve <service-type> documentation.
adds 7874e9e gnu: Refactor boot-service-type and
activation-service-type.
adds b0a4b6d gnu: libusb-for-axoloti: Update patch.
adds 017bffc gnu: libusb4java: Adjust for building with libusb 1.0.22.
adds ddbf2a9 gnu: Add r-pastecs.
adds 6174db2 gnu: Add r-venndiagram.
adds 996bed0 gnu: Add r-amap.
adds c974008 gnu: Add r-idr.
adds 594e5d7 gnu: nano: Update to 2.9.5.
adds 9c3f2c2 gnu: Add python-debug.
adds d232e02 gnu: Add duperemove.
adds 53e4269 gnu: kaiju: Update to 1.6.2.
adds e086d2f gnu: r-mutationalpatterns: Update to 1.4.3.
new 5576cfa Merge branch 'master' into core-updates
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
Makefile.am | 6 +-
build-aux/check-final-inputs-self-contained.scm | 36 +-
doc/guix.texi | 508 ++++++++++++---------
etc/guix-install.sh | 19 +-
gnu/build/activation.scm | 5 +-
gnu/build/vm.scm | 20 +-
gnu/local.mk | 10 +-
gnu/packages/admin.scm | 14 +-
gnu/packages/algebra.scm | 14 +-
gnu/packages/audio.scm | 111 +++++
gnu/packages/bioinformatics.scm | 41 +-
gnu/packages/boost.scm | 36 ++
gnu/packages/bootloaders.scm | 24 +-
gnu/packages/bootstrap.scm | 3 +-
gnu/packages/ccache.scm | 6 +-
gnu/packages/ci.scm | 6 +-
gnu/packages/compression.scm | 4 +-
gnu/packages/cran.scm | 383 +++++++++++++++-
gnu/packages/cups.scm | 4 +-
gnu/packages/dictionaries.scm | 11 +-
gnu/packages/disk.scm | 94 +++-
gnu/packages/django.scm | 6 +-
gnu/packages/dunst.scm | 14 +-
gnu/packages/emacs.scm | 97 ++--
gnu/packages/embedded.scm | 4 +-
gnu/packages/firmware.scm | 97 +++-
gnu/packages/flashing-tools.scm | 11 +-
gnu/packages/fonts.scm | 159 +++----
gnu/packages/fribidi.scm | 9 +-
gnu/packages/ftp.scm | 4 +-
gnu/packages/games.scm | 6 +-
gnu/packages/gnome.scm | 33 +-
gnu/packages/gnupg.scm | 8 +-
gnu/packages/gnuzilla.scm | 3 +-
gnu/packages/graph.scm | 5 +-
gnu/packages/graphviz.scm | 4 +-
gnu/packages/gtk.scm | 2 +
gnu/packages/guile.scm | 1 -
gnu/packages/haskell-crypto.scm | 7 +-
gnu/packages/haskell.scm | 284 +++---------
gnu/packages/image-viewers.scm | 17 +-
gnu/packages/java.scm | 448 +++++++-----------
gnu/packages/kde.scm | 27 +-
gnu/packages/lego.scm | 25 +-
gnu/packages/libffi.scm | 4 +-
gnu/packages/libreoffice.scm | 13 +-
gnu/packages/libusb.scm | 15 +-
gnu/packages/linux.scm | 22 +-
gnu/packages/lisp.scm | 13 +-
gnu/packages/mail.scm | 90 +++-
gnu/packages/mate.scm | 4 +-
gnu/packages/maths.scm | 34 +-
gnu/packages/messaging.scm | 4 +-
gnu/packages/mpd.scm | 4 +-
gnu/packages/mpi.scm | 9 +-
gnu/packages/music.scm | 4 +-
gnu/packages/nano.scm | 4 +-
gnu/packages/networking.scm | 3 +
gnu/packages/node.scm | 4 +-
gnu/packages/ntp.scm | 4 +-
gnu/packages/ocaml.scm | 19 +-
gnu/packages/package-management.scm | 2 +
gnu/packages/parallel.scm | 4 +-
.../patches/classpath-aarch64-support.patch | 29 ++
.../patches/hwloc-tests-without-sysfs.patch | 42 --
gnu/packages/patches/libusb-for-axoloti.patch | 14 +-
gnu/packages/patches/links-CVE-2017-11114.patch | 99 ----
gnu/packages/patches/lyx-2.2.3-fix-test.patch | 13 +
gnu/packages/patches/mupdf-CVE-2018-1000051.patch | 88 ++++
gnu/packages/patches/mupdf-CVE-2018-6544.patch | 109 +++++
gnu/packages/patches/shepherd-close-fds.patch | 36 --
.../patches/shepherd-herd-status-sorted.patch | 79 ----
.../patches/translate-shell-fix-curl-tests.patch | 60 +++
gnu/packages/pdf.scm | 4 +-
gnu/packages/perl-web.scm | 24 +
gnu/packages/perl.scm | 4 +-
gnu/packages/photo.scm | 12 +-
gnu/packages/pure.scm | 68 +++
gnu/packages/python-crypto.scm | 8 +-
gnu/packages/python.scm | 61 ++-
gnu/packages/ruby.scm | 10 +-
gnu/packages/samba.scm | 4 +-
gnu/packages/scheme.scm | 67 +++
gnu/packages/serialization.scm | 4 +-
gnu/packages/spice.scm | 4 +
gnu/packages/ssh.scm | 4 +-
gnu/packages/statistics.scm | 18 +-
gnu/packages/syndication.scm | 9 +-
gnu/packages/tex.scm | 94 ++++
gnu/packages/text-editors.scm | 6 +-
gnu/packages/tls.scm | 16 +-
gnu/packages/tv.scm | 5 +-
gnu/packages/version-control.scm | 13 +-
gnu/packages/video.scm | 43 +-
gnu/packages/virtualization.scm | 5 +-
gnu/packages/web-browsers.scm | 7 +-
gnu/packages/web.scm | 25 +-
gnu/packages/wm.scm | 1 -
gnu/packages/xdisorg.scm | 25 +-
gnu/packages/xorg.scm | 8 +-
gnu/services.scm | 4 +-
gnu/services/admin.scm | 7 +-
gnu/system.scm | 3 +-
gnu/system/examples/docker-image.tmpl | 47 ++
gnu/system/nss.scm | 10 +-
gnu/system/vm.scm | 117 ++++-
guix/ci.scm | 78 ++++
guix/docker.scm | 200 ++++----
guix/gexp.scm | 51 ++-
guix/git.scm | 7 +
guix/modules.scm | 3 +-
guix/scripts/build.scm | 16 +-
guix/scripts/environment.scm | 2 +-
guix/scripts/gc.scm | 10 +-
guix/scripts/graph.scm | 38 +-
guix/scripts/pack.scm | 73 ++-
guix/scripts/system.scm | 12 +-
guix/scripts/weather.scm | 109 ++++-
tests/gexp.scm | 61 ++-
tests/graph.scm | 20 +-
tests/guix-gc.sh | 5 +-
tests/guix-pack.sh | 83 ++++
tests/guix-system.sh | 17 +
tests/publish.scm | 10 +-
124 files changed, 3349 insertions(+), 1634 deletions(-)
create mode 100644 gnu/packages/patches/classpath-aarch64-support.patch
delete mode 100644 gnu/packages/patches/hwloc-tests-without-sysfs.patch
delete mode 100644 gnu/packages/patches/links-CVE-2017-11114.patch
create mode 100644 gnu/packages/patches/lyx-2.2.3-fix-test.patch
create mode 100644 gnu/packages/patches/mupdf-CVE-2018-1000051.patch
create mode 100644 gnu/packages/patches/mupdf-CVE-2018-6544.patch
delete mode 100644 gnu/packages/patches/shepherd-close-fds.patch
delete mode 100644 gnu/packages/patches/shepherd-herd-status-sorted.patch
create mode 100644 gnu/packages/patches/translate-shell-fix-curl-tests.patch
create mode 100644 gnu/packages/pure.scm
create mode 100644 gnu/system/examples/docker-image.tmpl
create mode 100644 guix/ci.scm
create mode 100644 tests/guix-pack.sh
- branch core-updates updated (12cb6c3 -> 5576cfa),
Marius Bakke <=