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25/30: gnu: Add r-hitc.
From: |
Ricardo Wurmus |
Subject: |
25/30: gnu: Add r-hitc. |
Date: |
Tue, 7 Nov 2017 17:32:59 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit c49102ecca08d4ad38c19f519195aa9d0cece0f1
Author: Ricardo Wurmus <address@hidden>
Date: Tue Nov 7 17:26:26 2017 +0100
gnu: Add r-hitc.
* gnu/packages/bioinformatics.scm (r-hitc): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 60772b5..bf47460 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10166,6 +10166,35 @@ intra-chromosomal contact maps produced by genome-wide
genome architecture
assays such as Hi-C.")
(license license:gpl2+)))
+(define-public r-hitc
+ (package
+ (name "r-hitc")
+ (version "1.22.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "HiTC" version))
+ (sha256
+ (base32
+ "0288xa1jy6nzvz2ha07csmp6dirjw5r7p9vy69q2wsbyzr02ymkp"))))
+ (properties `((upstream-name . "HiTC")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-matrix" ,r-matrix)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rtracklayer" ,r-rtracklayer)))
+ (home-page "https://bioconductor.org/packages/HiTC")
+ (synopsis "High throughput chromosome conformation capture analysis")
+ (description
+ "The HiTC package was developed to explore high-throughput \"C\" data
+such as 5C or Hi-C. Dedicated R classes as well as standard methods for
+quality controls, normalization, visualization, and further analysis are also
+provided.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")
- 09/30: gnu: Add r-gprofiler., (continued)
- 09/30: gnu: Add r-gprofiler., Ricardo Wurmus, 2017/11/07
- 16/30: gnu: Add r-mice., Ricardo Wurmus, 2017/11/07
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- 13/30: gnu: Add r-homo-sapiens., Ricardo Wurmus, 2017/11/07
- 15/30: gnu: Add r-ldblock., Ricardo Wurmus, 2017/11/07
- 12/30: gnu: Add r-org-hs-eg-db., Ricardo Wurmus, 2017/11/07
- 29/30: gnu: r-prabclus: Update description., Ricardo Wurmus, 2017/11/07
- 18/30: gnu: Add r-gqtlstats., Ricardo Wurmus, 2017/11/07
- 19/30: gnu: Add r-gviz., Ricardo Wurmus, 2017/11/07
- 24/30: gnu: Add r-fithic., Ricardo Wurmus, 2017/11/07
- 25/30: gnu: Add r-hitc.,
Ricardo Wurmus <=
- 23/30: gnu: Add r-sushi., Ricardo Wurmus, 2017/11/07
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- 28/30: gnu: r-fdrtool: Update description., Ricardo Wurmus, 2017/11/07
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