01/02: gnu: Add mongodb.

[Christopher Baines]

cbaines pushed a commit to branch master
in repository guix.

commit 6bbbca90736b6a34776a4ef15e954c80d8085878
Author: Christopher Baines <address@hidden>
Date:   Fri Oct 6 21:24:23 2017 +0100

    gnu: Add mongodb.
    
    * gnu/packages/databases.scm (mongodb): New variable.
---
 gnu/packages/databases.scm                         | 94 ++++++++++++++++++++++
 ...ngodb-support-unknown-linux-distributions.patch | 55 +++++++++++++
 2 files changed, 149 insertions(+)

diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index fbfb341..62f940e 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -69,8 +69,10 @@
   #:use-module (gnu packages rdf)
   #:use-module (gnu packages readline)
   #:use-module (gnu packages ruby)
+  #:use-module (gnu packages serialization)
   #:use-module (gnu packages tcl)
   #:use-module (gnu packages tls)
+  #:use-module (gnu packages valgrind)
   #:use-module (gnu packages xml)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
@@ -357,6 +359,98 @@ and generic API, and was originally intended for use with 
dynamic web
 applications.")
     (license license:bsd-3)))
 
+(define-public mongodb
+  (package
+    (name "mongodb")
+    (version "3.4.9")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/mongodb/mongo/archive/r";
+                                  version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32 "0gidwyvh3bdwmk2pccgkqkaln4ysgn8iwa7ihjzllsq0rdg95045"))
+              (patches
+               (list
+                (search-patch 
"mongodb-support-unknown-linux-distributions.patch")))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("openssl" ,openssl)
+       ("pcre" ,pcre)
+       ("yaml-cpp" ,yaml-cpp)
+       ("zlib" ,zlib)
+       ("snappy" ,snappy)
+       ("boost" ,boost)))
+    (native-inputs
+     `(("scons" ,scons)
+       ("python" ,python-2)
+       ("valgrind" ,valgrind)
+       ("perl" ,perl)))
+    (arguments
+     `(#:phases
+       (let ((common-options
+              `(;; "--use-system-tcmalloc" TODO: Missing gperftools
+                "--use-system-pcre"
+                ;; TODO
+                ;; build/opt/mongo/db/fts/unicode/string.o failed: Error 1
+                ;; --use-system-boost
+                "--use-system-snappy"
+                "--use-system-zlib"
+                "--use-system-valgrind"
+                ;; "--use-system-stemmer" TODO: Missing relevant package
+                "--use-system-yaml"
+                "--disable-warnings-as-errors"
+                ,(format #f "--jobs=~a" (parallel-job-count))
+                "--ssl")))
+         (modify-phases %standard-phases
+           (delete 'configure) ; There is no configure phase
+           (add-after 'unpack 'scons-propagate-environment
+             (lambda _
+               ;; Modify the SConstruct file to arrange for
+               ;; environment variables to be propagated.
+               (substitute* "SConstruct"
+                 (("^env = Environment\\(")
+                  "env = Environment(ENV=os.environ, "))
+               #t))
+           (add-after 'unpack 'create-version-file
+             (lambda _
+               (call-with-output-file "version.json"
+                 (lambda (port)
+                   (display ,(simple-format #f "{
+    \"version\": \"~A\"
+}" version) port)))
+               #t))
+           (replace 'build
+             (lambda _
+               (zero? (apply system*
+                             `("scons"
+                               ,@common-options
+                               "mongod" "mongo" "mongos")))))
+           (replace 'check
+             (lambda* (#:key tests? #:allow-other-keys)
+               (or (not tests?)
+                   (zero? (apply system*
+                                 `("scons"
+                                   ,@common-options
+                                   "dbtest" "unittests"))))))
+           (replace 'install
+             (lambda _
+               (let ((bin  (string-append (assoc-ref %outputs "out") "/bin")))
+                 (install-file "mongod" bin)
+                 (install-file "mongos" bin)
+                 (install-file "mongo" bin))
+               #t))))))
+    (home-page "https://www.mongodb.org/";)
+    (synopsis "High performance and high availability document database")
+    (description
+     "Mongo is a high-performance, high availability, schema-free
+document-oriented database.  A key goal of MongoDB is to bridge the gap
+between key/value stores (which are fast and highly scalable) and traditional
+RDBMS systems (which are deep in functionality).")
+    (license (list license:agpl3
+                   ;; Some parts are licensed under the Apache License
+                   license:asl2.0))))
+
 (define-public mysql
   (package
     (name "mysql")
diff --git 
a/gnu/packages/patches/mongodb-support-unknown-linux-distributions.patch 
b/gnu/packages/patches/mongodb-support-unknown-linux-distributions.patch
new file mode 100644
index 0000000..6057ebe
--- /dev/null
+++ b/gnu/packages/patches/mongodb-support-unknown-linux-distributions.patch
@@ -0,0 +1,55 @@
+From e724bb7018a482640c4f194f88b554af2c59d76e Mon Sep 17 00:00:00 2001
+From: Mark Benvenuto <address@hidden>
+Date: Wed, 20 Sep 2017 11:50:02 -0400
+Subject: [PATCH] SERVER-30857 Support unknown Linux distributions
+
+---
+ src/mongo/rpc/metadata/client_metadata.cpp | 6 ------
+ src/mongo/util/processinfo_linux.cpp       | 9 ++++++---
+ 2 files changed, 6 insertions(+), 9 deletions(-)
+
+diff --git a/src/mongo/rpc/metadata/client_metadata.cpp 
b/src/mongo/rpc/metadata/client_metadata.cpp
+index 845a315dd74..a959a4e31e9 100644
+--- a/src/mongo/rpc/metadata/client_metadata.cpp
++++ b/src/mongo/rpc/metadata/client_metadata.cpp
+@@ -302,9 +302,6 @@ void ClientMetadata::serializePrivate(StringData 
driverName,
+                                       StringData osArchitecture,
+                                       StringData osVersion,
+                                       BSONObjBuilder* builder) {
+-    invariant(!driverName.empty() && !driverVersion.empty() && 
!osType.empty() && !osName.empty() &&
+-              !osArchitecture.empty() && !osVersion.empty());
+-
+     BSONObjBuilder 
metaObjBuilder(builder->subobjStart(kMetadataDocumentName));
+ 
+     {
+@@ -347,9 +344,6 @@ Status ClientMetadata::serializePrivate(StringData 
driverName,
+                                         StringData osVersion,
+                                         StringData appName,
+                                         BSONObjBuilder* builder) {
+-    invariant(!driverName.empty() && !driverVersion.empty() && 
!osType.empty() && !osName.empty() &&
+-              !osArchitecture.empty() && !osVersion.empty());
+-
+     if (appName.size() > kMaxApplicationNameByteLength) {
+         return Status(ErrorCodes::ClientMetadataAppNameTooLarge,
+                       str::stream() << "The '" << kApplication << "." << kName
+diff --git a/src/mongo/util/processinfo_linux.cpp 
b/src/mongo/util/processinfo_linux.cpp
+index c3debf377bd..c2813b026b0 100644
+--- a/src/mongo/util/processinfo_linux.cpp
++++ b/src/mongo/util/processinfo_linux.cpp
+@@ -376,10 +376,13 @@ class LinuxSysHelper {
+             if ((nl = name.find('\n', nl)) != string::npos)
+                 // stop at first newline
+                 name.erase(nl);
+-            // no standard format for name and version.  use kernel version
+-            version = "Kernel ";
+-            version += 
LinuxSysHelper::readLineFromFile("/proc/sys/kernel/osrelease");
++        } else {
++            name = "unknown";
+         }
++
++        // There is no standard format for name and version so use the kernel 
version.
++        version = "Kernel ";
++        version += 
LinuxSysHelper::readLineFromFile("/proc/sys/kernel/osrelease");
+     }
+ 
+     /**