01/01: gnu: bioinformatics: Work around more "dotless @INC" build failures.

[Ben Woodcroft]

benwoodcroft pushed a commit to branch master
in repository guix.

commit 0691851a64382090c6deb30b967217725bdaaad6
Author: Ben Woodcroft <address@hidden>
Date:   Thu Aug 31 12:37:05 2017 +0800

    gnu: bioinformatics: Work around more "dotless @INC" build failures.
    
    * gnu/packages/bioinformatics.scm (ncbi-vdb, sra-tools)[arguments]: Add
    'set-perl-search-path' phase.
---
 gnu/packages/bioinformatics.scm | 14 ++++++++++++++
 1 file changed, 14 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e372953..70418cd 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4751,6 +4751,13 @@ simultaneously.")
        #:tests? #f ; no "check" target
        #:phases
        (modify-phases %standard-phases
+         (add-before 'configure 'set-perl-search-path
+           (lambda _
+             ;; Work around "dotless @INC" build failure.
+             (setenv "PERL5LIB"
+                     (string-append (getcwd) "/setup:"
+                                    (getenv "PERL5LIB")))
+             #t))
          (replace 'configure
            (lambda* (#:key inputs outputs #:allow-other-keys)
              (let ((out (assoc-ref outputs "out")))
@@ -5056,6 +5063,13 @@ sequence itself can be retrieved from these databases.")
                                  "/lib32")))
        #:phases
        (modify-phases %standard-phases
+         (add-before 'configure 'set-perl-search-path
+           (lambda _
+             ;; Work around "dotless @INC" build failure.
+             (setenv "PERL5LIB"
+                     (string-append (getcwd) "/setup:"
+                                    (getenv "PERL5LIB")))
+             #t))
          (replace 'configure
            (lambda* (#:key inputs outputs #:allow-other-keys)
              ;; The build system expects a directory containing the sources and