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branch master updated (8b52167 -> 7ccb874)


From: Mark H. Weaver
Subject: branch master updated (8b52167 -> 7ccb874)
Date: Thu, 4 Aug 2016 13:02:31 +0000 (UTC)

mhw pushed a change to branch master
in repository guix.

      from  8b52167   gnu: python-statsmodels: Fix tests.
       new  4541ca9   Revert "Update NEWS."
       new  5b098cc   Revert "gnu: zsh: Move to shells.scm."
       new  0832787   Revert "Merge branch 'core-updates'"
      adds  c13a9fe   build-system/gnu: Do not patch symlinks.
      adds  b7bc861   gnu: sqlite: Update to 3.10.2.
      adds  7de5236   gnu: gnutls: Update to 3.4.9.
      adds  e7e7a1e   gnu: python-2: Update to 2.7.11.
      adds  10a42aa   gnu: python-2: Enable tests.
      adds  5cd2c1e   gnu: ed: Update to 1.13.
      adds  ff0c847   gnu: ed: Use 'modify-phases'.
      adds  18caed4   gnu: grep: Update to 2.23.
      adds  419016d   gnu: linux-libre-headers: Update to 4.1.18.
      adds  578a4c0   gnu: libdrm: Update to 2.4.67.
      adds  5d9356f   gnu: binutils: Update to 2.26.
      adds  10baeb3   gnu: coreutils: Update to 8.25.
      adds  fe5f687   gnu: giflib: Update to 5.1.2.
      adds  048ec1a   Merge branch 'master' into core-updates
      adds  5c19dab   gnu: wrap-python3: Remove extraneous commas from Scheme 
lists.
      adds  52c0c82   gnu: bootstrap: Honor the origin's names.
      adds  3b69858   gnu: cmake: Update to 3.4.3.
      adds  2a8b3b4   gnu: dbus: Merge with dbus/activation.
      adds  6e4e336   gnu: mpfr: Update to 3.1.4.
      adds  f4d9339   gnu: check: Update to 0.10.0.
      adds  12c7eb1   gnu: font-dejavu: Update to 2.35.
      adds  70e17ba   gnu: grep: Update to 2.24.
      adds  0eccd29   gnu: sqlite: Update to 3.11.1.
      adds  2a37ff2   gnu: postgresql: Update to 9.5.1.
      adds  2dbed47   gnu: cmake: Update to 3.5.0.
      adds  09ec508   Merge branch 'master' into core-updates
      adds  8c9ec20   gnu: openssl: Enforce non-reference to perl.
      adds  2382cb4   gnu: texinfo: Use version 6.1 by default.
      adds  51514e6   gnu: expat: Update to 2.1.1.
      adds  ea5d388   gnu: gzip: Update to 1.7.
      adds  f8835ff   gnu: fontconfig: Find fonts in the system profile.
      adds  933d2fe   Merge branch 'master' into core-updates
      adds  8f03b70   gnu: info-reader: Adjust to 'texinfo-6.1' removal.
      adds  5d6c4d3   gnu: commencement: Disable Texinfo tests during bootstrap.
      adds  2a5739b   ld-wrapper: Unset 'GUILE_LOAD_COMPILED_PATH'.
      adds  81cea47   gnu: perl: Do not retain references to GCC & co.
      adds  61516a1   Revert "gnu: binutils: Update to 2.26."
      adds  e37595d   gnu: glibc: Update to 2.23.
      adds  425b853   gnu: pcre: Fix CVE-2016-3191.
      adds  d46dd72   gnu: pcre: Add missing #:use-module.
      adds  d786d2f   gnu: pcre: Disallow references to the "doc" output.
      adds  28181fa   gnu: gzip: Fix download url.
      adds  dd581e9   gnu: util-linux: Add "static" output.
      adds  7cad981   gnu: btrfs-progs: Add "static" output.
      adds  81068f1   gnu: libgcrypt: Update to 1.7.0.
      adds  868c13c   gnu: gcc-5: Remove dependency on Texinfo.
      adds  e3d0fcb   gnu: Default to GCC 5.
      adds  4d31bdb   gnu: grep: Update to 2.25.
      adds  0bfb9b4   gnu: gzip: Update to 1.8.
      adds  c3052d6   Merge branch 'master' into core-updates
      adds  c74c7c1   gnu: libxslt: Make generated documentation reproducible.
      adds  6d49ca3   gnu: pcre: Add "bin" output.
      adds  503409b   gnu: qpdf: Remove run-time dependency on Perl.
      adds  d03781c   gnu: openssl: Disallow references to Perl.
      adds  8c78aeb   gnu: openssl: Move static libraries to "static" output.
      adds  a909b57   gnu: openssl: Add "doc" output.
      adds  b5e0c87   gnu: guile: Do not build static libraries.
      adds  d46123a   gnu: procps: Make procps build on non Linux systems.
      adds  478e75b   gnu: wrap-python3: Create more symlinks.
      adds  ff1f39e   gnu: bdb: Disallow references to "doc" output.
      adds  0e50d52   gnu: bdb: Do not build static libraries.
      adds  958d25a   gnu: ghostscript: Disallow references to "doc".
      adds  eb354bd   gnu: ghostscript: Do not build the statically-linked 'gs' 
binary.
      adds  6ea06a0   gnu: cups-minimal: Use 'modify-phases'.
      adds  55de892   gnu: glibc: Rename linux-headers input to kernel-headers.
      adds  a8938c8   gnu: poppler: Do not build static libraries.
      adds  9ffe61b   gnu: python: Remove unnecessary installed tests.
      adds  216c283   gnu: python: Make sure shared libraries are stripped.
      adds  f10e7ef   gnu: libgpg-error: Update to 1.22.
      adds  eb74eb4   Merge branch 'master' into core-updates
      adds  4fa05a8   gnu: libarchive: Update to 3.2.0.
      adds  ac52b72   gnu: kmod: Update to 22.
      adds  18e681b   gnu: bdb: Update to 6.2.23.
      adds  5c1c225   gnu: libva: Update to 1.7.0.
      adds  0158ca7   gnu: cross-base: Add srfi-26 for glibc.
      adds  5fdd142   gnu: Add the X color name database file.
      adds  1de1c56   gnu: netpbm: Use 'modify-phases' syntax.
      adds  2492581   gnu: netpbm: Fix location of X color name database.
      adds  9f9861d   gnu: netpbm: Return #t from custom phases.
      adds  549f951   gnu: Add Chez-Scheme.
      adds  1d30d55   gnu: openssl: Update to 1.0.2h.
      adds  dffded6   gnu: libtasn1: Update to 4.8.
      adds  ec0ea24   gnu: openldap: Update to 2.4.44.
      adds  2135d1e   gnu: gdbm: Update to 1.12.
      adds  74d6373   gnu: tar: Update to 1.29.
      adds  c19700c   gnu: gnutls: Update to 3.5.0.
      adds  45ff4b5   gnu: sqlite: Update to 3.12.2.
      adds  12b6f65   gnu: openssl: Remove workaround for GCC 4.9.3 (no longer 
used).
      adds  bc73a84   Merge branch 'master' into core-updates
      adds  2cf0221   gnu: pcre: Remove now-unneeded replacement.
      adds  5d4d7a9   gnu: glibc-hurd: Update to 20160518.
      adds  aa81eb7   gnu: glibc-hurd-headers: Use correct "--host".
      adds  9dee9e8f  Revert "gnu: Default to GCC 5."
      adds  aeafff5   Merge branch 'master' into core-updates
      adds  3c9e0dd   gnu: libxml2: Upgrade to 2.9.4.
      adds  b09617d   gnu: base: Add glibc-for-target macro.
      adds  26a28c8   gnu: gnumach-headers: Use "--build=i586-pc-gnu" only when 
not cross-building.
      adds  6648cf6   gnu: hurd-headers: Use "--host=i586-pc-gnu" only when not 
cross-building.
      adds  90b5d00   gnu: hurd: Remove inputs no longer needed.
      adds  e1ecd50   gnu: hurd: Move configure flags from "hurd-minimal" to 
"hurd-headers".
      adds  36f0c9f   gnu: make: Update to 4.2.
      adds  99865f6   gnu: gettext: Update to 0.19.8.
      adds  bbe0329   gnu: tar: Allow cross-compilation.
      adds  05aa576   gnu: procmail: Remove unneeded glibc input.
      adds  8af5cac   Revert "gnu: openssl: Remove workaround for GCC 4.9.3 (no 
longer used)."
      adds  ee86e7e   Merge branch 'master' into core-updates
      adds  28b3317   gnu: libxslt: Update to 1.1.29.
      adds  809f176   gnu: swig: Adjust to pcre output split.
      adds  9f44dfc   build: Update list of libxslt patches.
      adds  28206a8   gnu: automake: Adjust test to ignore new gzip warnings.
      adds  f828ff5   gnu: boost: Allow for customizable build flags.
      adds  a083b5c   gnu: mit-krb5: Disable parallel build and testing.
      adds  65efa9b   gnu: mit-krb5: Update to 1.14.2.
      adds  8956d07   gnu: cross-gcc: Allow Hurd libraries to be found.
      adds  61dc82d   gnu: netpbm: Look for 'gsc' instead of 'gs'.
      adds  56501d3   gnu: netpbm: Remove timestamps from build products.
      adds  c0eeccb   Merge branch 'master' into core-updates
      adds  84530ee   Merge branch 'master' into core-updates
      adds  557fa39   gnu: Add bdb-5.3.
      adds  a0adbb0   gnu: openldap: Use bdb-5.3.
      adds  09cbd53   gnu: libarchive: Update to 3.2.1.
      adds  28b49c0   gnu: cmake: Disable checking for libarchive in tests.
      adds  6e261af   gnu: cmake: Use 'modify-phases'.
      adds  a12f6f4   gnu: cmake: Update to 3.5.2.
      adds  875715c   build: Remove unneeded conditionals for (guix build 
syscalls).
      adds  74c8b17   gnu: Adjust to PCRE split.
      adds  01497df   Merge branch 'master' into core-updates
      adds  98378db   gnu: git: Use 'modify-phases'.
      adds  8601fea   gnu: git: Fix builds with Make 4.2.
      adds  de1b319   gnu: pulseaudio: Enable support for Bluetooth.
      adds  d9ecec9   gnu: mit-krb5: Disable tests on i686.
      adds  d2375c4   gnu: mit-krb5: Disable tests on all 32-bit platforms.
      adds  187e909   Revert "gnu: wrap-python3: Create more symlinks."
      adds  2d02a77   gnu: mozjs-24: Disable parallel build.
      adds  d8fa9cf   gnu: Add python-imagesize.
      adds  afcb871   gnu: Add python-alabaster.
      adds  936984b   gnu: Add python-snowballstemmer.
      adds  5ebd952   gnu: python-sphinx: Update to 1.4.4.
      adds  9852994   gnu: python-sphinx-rtd-theme: Update to 0.1.9.
      adds  9a745d7   gnu: cross-gcc-arguments: Disable libitm, libvtv and 
libsanitizer.
      adds  2d634d9   gnu: texlive: Fix 'texmf-local' search path.
      adds  8b5ed30   gnu: conky: Update to 1.10.3.
      adds  4277313   gnu: exim: Adjust to pcre output split.
      adds  38e9373   gnu: glibc-2.21: Fix substitutes in glibc-2.21.
      adds  5edf2f0   gnu: grue-hunter: Adapt to gzip-1.8 update.
      adds  bfd7780   Revert "gnu: python-sphinx-rtd-theme: Update to 0.1.9."
      adds  1a27944   Revert "gnu: python-sphinx: Update to 1.4.4."
      adds  ce09c02   Revert "gnu: Add python-snowballstemmer."
      adds  ced40bd   Revert "gnu: Add python-alabaster."
      adds  91f9f33   Revert "gnu: Add python-imagesize."
      adds  5d4c90a   gnu: gnutls: Update to 3.5.2.
      adds  7575655   Merge branch 'master' into core-updates
      adds  d778fa5   gnu: mozjs: Disable parallel build.
      adds  d227260   Merge branch 'master' into core-updates
      adds  f75f261   gnu: libepoxy: Update to 1.3.1.
      adds  fe7fa35   gnu: bitcoin-core: Build with bdb-5.3.
      adds  1abdc16   Merge branch 'master' into core-updates
      adds  71eba3e   gnu: Add 'ghostscript-gs' and 'ghostscript-gs-with-x'.
      adds  d8eb912   gnu: Use 'ghostscript-gs' in packages that need the 'gs' 
command.
      adds  14656f4   Merge remote-tracking branch 'origin/master' into 
core-updates
      adds  e83a13f   gnu: fastcap: Build with ghostscript-gs.
      adds  6689d09   gnu: lpsolve: Fail as early as possible.
      adds  5dbfbef   gnu: lpsolve: Fix compilation issue.
      adds  5ef469c   gnu: lout: Build with ghostscript-gs.
      adds  02b934e   gnu: lout: Make ghostscript-gs a native input.
      adds  5425269   gnu: lout: Add input ghostscript.
      adds  0072b3d   gnu: skribilo: Add input ghostscript-gs.
      adds  8b732bf   gnu: python-2.7: Disable test failing on mips64el-linux.
      adds  1bb163b   gnu: address@hidden: Delete faulty test on mips64el only.
      adds  e309c75   Merge remote-tracking branch 'origin/master' into 
core-updates
      adds  4320c1c   gnu: asymptote: Add native input gs.
      adds  d6dfc39   gnu: r-s4vectors: Update to 0.10.2.
      adds  2d88825   gnu: r-genomicfeatures: Update to 1.24.5.
      adds  303163c   gnu: r-genomeinfodb: Update to 1.8.3.
      adds  380d3f8   gnu: r-rtracklayer: Update to 1.32.2.
      adds  722b4c9   gnu: r-genomicalignments: Update to 1.8.4.
      adds  0d159d8   gnu: r-summarizedexperiment: Update to 1.2.3.
      adds  658f36e   gnu: r-biostrings: Update to 2.40.2.
      adds  7a0594f   gnu: r-biocparallel: Update to 1.6.3.
      adds  ae60f38   gnu: r-annotationdbi: Update to 1.34.4.
      adds  362f39d   gnu: r-genomicranges: Update to 1.24.2.
      adds  bd0cc37   gnu: r-xvector: Update to 0.12.1.
      adds  1c4ad60   gnu: r-limma: Update to 3.28.17.
      adds  e426cd7   gnu: r-iranges: Update to 2.6.1.
      adds  ae32c58   gnu: r-bsgenome: Update to 1.40.1.
      adds  c6b3dc6   gnu: vlc: Drop -ffast-math from the compilation flags.
      adds  212163f   gnu: dico: Patch 'idxgcide' bug.
      adds  622c22c   Merge branch 'master' into core-updates
      adds  49d725a   Merge branch 'master' into core-updates
      adds  0bab3af   Merge branch 'master' into core-updates
      adds  359aba7   Merge branch 'master' into core-updates
      adds  716753c   tests: base: Correct invalid merge.
      adds  c2c54eb   gnu: Add glibc 2.22.
      adds  85860fd   gnu: glibc-locales: Fix build.
      adds  33906d5   gnu: perl-xml-libxml: Update to 2.0128.
      adds  bb48452   gnu: python-alembic: Update to 0.8.7.
      adds  7b995c7   gnu: wine: Update to 1.9.15.
      adds  101e847   gnu: dealii: Update to 8.4.1.
      adds  70a9672   gnu: dealii: Unregister deleted patch.
      adds  ce430bd   gnu: tcc: Use "kernel-headers" instead of "linux-headers" 
to designate input.
      adds  dceba1c   gnu: zsh: Update to 5.2.
      adds  acac969   gnu: fastcap: Add input ghostscript.
      adds  42bf342   gnu: rapicorn: Add patch to handle isnan.
      adds  38f1cf8   download: Pass the raw file name to content-addressed 
mirrors.
      adds  40f788b   download: Add mirror.hydra.gnu.org as a content-addressed 
mirror.
      adds  1250034   tests: 'guix-environment-container.sh' works when run 
from a tmpfs.
      adds  932b2ea   gnu: ecl: Use "kernel-headers" instead of "linux-headers" 
to designate input.
      adds  3d337bb   Merge branch 'master' into core-updates
      adds  2be896d   gnu: unison: Add input ghostscript.
      adds  a348af4   gnu: texlive-texmf: Mark as non-substitutable.
      adds  23431ad   Update NEWS.
      adds  d92e23d   build: Set XDG_CACHE_HOME to avoid loading stale .go 
files.
      adds  a8cb87a   install: Add nvi to the image.
       new  536fc5f   Merge branch 'core-updates'
       new  7977d76   Update NEWS.
       new  7ccb874   gnu: zsh: Move to shells.scm.

The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:



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