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02/03: gnu: Add r-bsgenome-celegans-ucsc-ce6.
From: |
Ricardo Wurmus |
Subject: |
02/03: gnu: Add r-bsgenome-celegans-ucsc-ce6. |
Date: |
Mon, 11 Apr 2016 13:11:25 +0000 |
rekado pushed a commit to branch master
in repository guix.
commit 943bd6279fd60e6fc4f5b781c1c52315b9c1011c
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 30 12:24:16 2016 +0200
gnu: Add r-bsgenome-celegans-ucsc-ce6.
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6): New
variable.
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
1 files changed, 32 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 15a367d..23dc9d2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4831,6 +4831,38 @@ by UCSC (hg19, February 2009) and stored in Biostrings
objects.")
provided by UCSC (mm9, July 2007) and stored in Biostrings objects.")
(license license:artistic2.0)))
+(define-public r-bsgenome-celegans-ucsc-ce6
+ (package
+ (name "r-bsgenome-celegans-ucsc-ce6")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "http://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Celegans.UCSC.ce6_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0mqzb353xv2c3m3vkb315dkmnxkgczp7ndnknyhpgjlybyf715v9"))))
+ (properties
+ `((upstream-name . "BSgenome.Celegans.UCSC.ce6")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "http://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce6/")
+ (synopsis "Full genome sequences for Worm")
+ (description
+ "This package provides full genome sequences for Caenorhabditis
+elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings
+objects.")
+ (license license:artistic2.0)))
+
(define-public r-motifrg
(package
(name "r-motifrg")