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07/07: gnu: Add OrfM.
From: |
Ricardo Wurmus |
Subject: |
07/07: gnu: Add OrfM. |
Date: |
Fri, 12 Jun 2015 10:58:05 +0000 |
rekado pushed a commit to branch master
in repository guix.
commit 1e44cf8b0ffe88f2675718c0a0f5119c87a8bf6a
Author: Ben Woodcroft <address@hidden>
Date: Tue Jun 9 16:10:51 2015 +0200
gnu: Add OrfM.
* gnu/packages/bioinformatics.scm (orfm): New variable.
Signed-off-by: Ricardo Wurmus <address@hidden>
---
gnu/packages/bioinformatics.scm | 21 +++++++++++++++++++++
1 files changed, 21 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index df627fb..7175ecf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1101,6 +1101,27 @@ RNA-Seq, the MISO model uses Bayesian inference to
compute the probability
that a read originated from a particular isoform.")
(license license:gpl2)))
+(define-public orfm
+ (package
+ (name "orfm")
+ (version "0.3.2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/wwood/OrfM/releases/download/v"
+ version "/orfm-" version ".tar.gz"))
+ (sha256
+ (base32
+ "00jqvlspj9662ni9r4n1snxfnwkzc02i46g5nk1kwjshi6v3vgg3"))))
+ (build-system gnu-build-system)
+ (inputs `(("zlib" ,zlib)))
+ (synopsis "Simple and not slow open reading frame (ORF) caller")
+ (description
+ "An ORF caller finds stretches of DNA that when translated are not
+interrupted by stop codons. OrfM finds and prints these ORFs.")
+ (home-page "https://github.com/wwood/OrfM")
+ (license license:lgpl3+)))
+
(define-public python2-pbcore
(package
(name "python2-pbcore")
- branch master updated (48d21d6 -> 1e44cf8), Ricardo Wurmus, 2015/06/12
- 03/07: gnu: Add python-libsvm., Ricardo Wurmus, 2015/06/12
- 02/07: gnu: Add libsvm., Ricardo Wurmus, 2015/06/12
- 05/07: gnu: Add Couger., Ricardo Wurmus, 2015/06/12
- 04/07: gnu: Add randomjungle., Ricardo Wurmus, 2015/06/12
- 07/07: gnu: Add OrfM.,
Ricardo Wurmus <=
- 06/07: gnu: icedtea7: Bootstrap with GCJ., Ricardo Wurmus, 2015/06/12
- 01/07: gnu: ngs-sdk: Update to version 1.1.1., Ricardo Wurmus, 2015/06/12