[Gsrc-commit] trunk r5662: update bedtools to 2.27.1

[Carl Hansen]

------------------------------------------------------------
revno: 5662
revision-id: address@hidden
parent: address@hidden
committer: address@hidden
branch nick: trunk
timestamp: Fri 2018-06-29 12:13:38 -0700
message:
  update bedtools to 2.27.1
modified:
  pkg/bio/bedtools/Makefile      makefile-20160617195624-kwz1a09vkg4le6fu-73
  pkg/bio/bedtools/sha256sums    sha256sums-20160617195624-kwz1a09vkg4le6fu-74

=== modified file 'pkg/bio/bedtools/Makefile'
--- a/pkg/bio/bedtools/Makefile 2017-11-02 06:01:16 +0000
+++ b/pkg/bio/bedtools/Makefile 2018-06-29 19:13:38 +0000
@@ -1,6 +1,7 @@
 # Copyright © 2014 Brandon Invergo <address@hidden>
+# Copyright © 2018 Carl Hansen <address@hidden>
 #
-# This file is part of BioSRC.
+# This file is part of BioSRC and GSRC.
 #
 # BioSRC is free software: you can redistribute it and/or modify it
 # under the terms of the GNU General Public License as published by
@@ -14,13 +15,16 @@
 #
 # You should have received a copy of the GNU General Public License
 # along with BioSRC.  If not, see <http://www.gnu.org/licenses/>.
+#
+#
+# Send bug reports and comments about GSRC problems to address@hidden
 
 NAME = BEDTools
 GARNAME = bedtools
-UPSTREAMNAME = bedtools2
-GARVERSION = 2.26.0
+#UPSTREAMNAME = bedtools2
+GARVERSION = 2.27.1
 HOME_URL = https://github.com/arq5x/bedtools2
-DESCRIPTION = A swiss army knife for genome arithmetic
+DESCRIPTION = A set of utilites for genome arithmetic and analysis
 define BLURB
 bedtools consists of a set of utilities for performing a wide range of
 genomic analysis tasks.  They may primarily be used to enable genome
@@ -31,11 +35,15 @@
 CITE = doi:10.1093/bioinformatics/btq033
 
 ######################################################################
+# 
https://github.com/arq5x/bedtools2/releases/download/v2.27.1/bedtools-2.27.1.tar.gz
 
-MASTER_SITES = $(MASTER_GITHUB)
-MASTER_SUBDIR = arq5x/$(UPSTREAMNAME)/archive/
-DISTFILES = v$(GARVERSION).tar.gz
+MASTER_SITES = https://github.com/
+MASTER_SUBDIR = arq5x/bedtools2/releases/download/v$(GARVERSION)/
+DISTFILES = $(DISTNAME).tar.gz
+SIGFILES = 
+CONFIGURE_SCRIPTS =
 BUILD_SCRIPTS = $(WORKSRC)/Makefile
+WORKSRC = $(WORKDIR)/bedtools2
 INSTALL_SCRIPTS = program
 
 BUILDDEPS =
@@ -52,3 +60,5 @@
                $(INSTALL_BIN) $$f; \
        done
        $(MAKECOOKIE)
+
+

=== modified file 'pkg/bio/bedtools/sha256sums'
--- a/pkg/bio/bedtools/sha256sums       2017-11-02 06:01:16 +0000
+++ b/pkg/bio/bedtools/sha256sums       2018-06-29 19:13:38 +0000
@@ -1,1 +1,1 @@
-15db784f60a11b104ccbc9f440282e5780e0522b8d55d359a8318a6b61897977  
download/v2.26.0.tar.gz
+c8c2acbaf3f9cb92dcf8e5cd59af6b31ae9c4598efb786ba6c84f66ca72fafd9  
download/bedtools-2.27.1.tar.gz