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[Gsrc-commit] trunk r5010: misc. minor updates
|
From: |
Carl Hansen |
|
Subject: |
[Gsrc-commit] trunk r5010: misc. minor updates |
|
Date: |
Sun, 26 Nov 2017 16:24:51 -0500 (EST) |
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User-agent: |
Bazaar (2.7.0dev1) |
------------------------------------------------------------
revno: 5010
revision-id: address@hidden
parent: address@hidden
committer: address@hidden
branch nick: trunk
timestamp: Sun 2017-11-26 13:24:45 -0800
message:
misc. minor updates
modified:
pkg/bio/bambamc/Makefile makefile-20160617200040-lqf8h520dfq0rtk7-44
pkg/bio/barrnap/Makefile makefile-20160617195624-kwz1a09vkg4le6fu-71
pkg/bio/barrnap/sha256sums sha256sums-20160617195624-kwz1a09vkg4le6fu-72
pkg/bio/beagle-lib/Makefile makefile-20160617200040-lqf8h520dfq0rtk7-46
pkg/bio/melting/Makefile makefile-20160617195624-kwz1a09vkg4le6fu-124
pkg/gnu/emacs/Makefile makefile-20160617014725-uokjfnggs70iry9h-606
pkg/gnu/gettext/Makefile makefile-20160617014725-uokjfnggs70iry9h-708
pkg/gnu/gv/Makefile makefile-20160617014725-uokjfnggs70iry9h-1007
pkg/gnu/parallel/Makefile makefile-20160617014725-uokjfnggs70iry9h-1517
pkg/other/zlib/Makefile makefile-20170211005603-7k3czfahc4ol1rwq-3
=== modified file 'pkg/bio/bambamc/Makefile'
--- a/pkg/bio/bambamc/Makefile 2016-06-17 20:01:53 +0000
+++ b/pkg/bio/bambamc/Makefile 2017-11-26 21:24:45 +0000
@@ -44,3 +44,4 @@
include ../../../gar/gar.lib/auto.mk
include config.mk
+
=== modified file 'pkg/bio/barrnap/Makefile'
--- a/pkg/bio/barrnap/Makefile 2016-06-17 19:57:40 +0000
+++ b/pkg/bio/barrnap/Makefile 2017-11-26 21:24:45 +0000
@@ -1,4 +1,5 @@
# Copyright © 2013, 2014 Brandon Invergo <address@hidden>
+# Copyright © 2017 Carl Hansen <address@hidden>
#
# This file is part of GSRC.
#
@@ -17,7 +18,7 @@
NAME = Barrnap
GARNAME = barrnap
-GARVERSION = 0.5
+GARVERSION = 0.6
HOME_URL = http://www.vicbioinformatics.com/software.barrnap.shtml
DESCRIPTION = Basic rapid ribosomal RNA predictor
define BLURB
=== modified file 'pkg/bio/barrnap/sha256sums'
--- a/pkg/bio/barrnap/sha256sums 2016-06-17 19:57:40 +0000
+++ b/pkg/bio/barrnap/sha256sums 2017-11-26 21:24:45 +0000
@@ -1,1 +1,1 @@
-3af6cfab0c1c2900fad3651f2e6f24678d522e5487a0366309d0436490dca008
download/barrnap-0.5.tar.gz
+4932021624107f3da46c2f13ac9bb0e1f2dcca15487a2fff387c6b19a8f27f04
download/barrnap-0.6.tar.gz
=== modified file 'pkg/bio/beagle-lib/Makefile'
--- a/pkg/bio/beagle-lib/Makefile 2016-06-17 20:01:53 +0000
+++ b/pkg/bio/beagle-lib/Makefile 2017-11-26 21:24:45 +0000
@@ -17,9 +17,10 @@
NAME = BEAGLE
GARNAME = beagle-lib
-GARVERSION = 2.1.2
-SVN_REVISION = 1240
-HOME_URL = https://code.google.com/p/beagle-lib/
+GARVERSION = 2
+UPSTREAMNAME = master
+#SVN_REVISION = 1240
+HOME_URL = https://github.com/beagle-dev/beagle-lib/wiki
DESCRIPTION = A library for evaluating the likelihoodof sequence evolution on
trees
define BLURB
BEAGLE is a library of functions for evaluating phylogenetic
@@ -30,17 +31,16 @@
CITE = doi:10.1093/sysbio/syr100
######################################################################
-
-MASTER_SITES = svnco://beagle-lib.googlecode.com/
-MASTER_SUBDIR = svn/trunk/
-SVN_PATH = $(subst svnco,http,$(MASTER_SITES))$(MASTER_SUBDIR)
-DISTFILES = $(DISTNAME).tar.gz
-NOCHECKSUM = $(DISTFILES)
+#https://github.com/beagle-dev/beagle-lib/archive/master.zip
+MASTER_SITES = $(MASTER_GITHUB)/
+MASTER_SUBDIR = /beagle-dev/beagle-lib/archive/
+DISTFILES = $(UPSTREAMNAME).zip
+#NOCHECKSUM = $(DISTFILES)
BUILDDEPS =
LIBDEPS =
-USE_AUTORECONF = y
+#USE_AUTORECONF = y
######################################################################
=== modified file 'pkg/bio/melting/Makefile'
--- a/pkg/bio/melting/Makefile 2016-06-19 01:53:54 +0000
+++ b/pkg/bio/melting/Makefile 2017-11-26 21:24:45 +0000
@@ -62,3 +62,4 @@
install -m644 $$f $(packageprefix)/$(UPSTREAMNAME)/src/`$$f`; \
done
$(MAKECOOKIE)
+
=== modified file 'pkg/gnu/emacs/Makefile'
--- a/pkg/gnu/emacs/Makefile 2017-09-13 05:41:00 +0000
+++ b/pkg/gnu/emacs/Makefile 2017-11-26 21:24:45 +0000
@@ -15,6 +15,9 @@
#
# You should have received a copy of the GNU General Public License
# along with GSRC. If not, see <http://www.gnu.org/licenses/>.
+#
+#
+# Send bug reports and comments about GSRC problems to address@hidden
NAME = Emacs
GARNAME = emacs
@@ -40,25 +43,27 @@
DISTFILES = $(DISTNAME)$(MINOR_UPDATE).tar.xz
SIGFILES = $(DISTNAME)$(MINOR_UPDATE).tar.xz.sig
INFO_FILES = \
-ada-mode.info.gz emacs.info.gz pgg.info.gz \
-auth.info.gz epa.info.gz rcirc.info.gz \
-autotype.info.gz erc.info.gz reftex.info.gz \
-bovine.info.gz ert.info.gz remember.info.gz \
-calc.info.gz eshell.info.gz sasl.info.gz \
-ccmode.info.gz eudc.info.gz sc.info.gz \
-cl.info.gz flymake.info.gz semantic.info.gz \
-dbus.info.gz forms.info.gz ses.info.gz \
-dired-x.info.gz gnus.info.gz sieve.info.gz \
-ebrowse.info.gz htmlfontify.info.gz smtpmail.info.gz \
-ede.info.gz idlwave.info.gz speedbar.info.gz \
-ediff.info.gz info.info.gz srecode.info.gz \
-edt.info.gz mairix-el.info.gz tramp.info.gz \
-efaq.info.gz message.info.gz url.info.gz \
-eieio.info.gz mh-e.info.gz vip.info.gz \
-eintr.info.gz newsticker.info.gz viper.info.gz \
-elisp.info.gz nxml-mode.info.gz widget.info.gz \
-emacs-gnutls.info.gz org.info.gz wisent.info.gz \
-emacs-mime.info.gz pcl-cvs.info.gz woman.info.gz
+ada-mode.info.gz epa.info.gz pgg.info.gz \
+auth.info.gz erc.info.gz rcirc.info.gz \
+autotype.info.gz ert.info.gz reftex.info.gz \
+bovine.info.gz eshell.info.gz remember.info.gz \
+calc.info.gz eudc.info.gz sasl.info.gz \
+ccmode.info.gz eww.info.gz sc.info.gz \
+cl.info.gz flymake.info.gz semantic.info.gz \
+dbus.info.gz forms.info.gz ses.info.gz \
+dired-x.info.gz gnus.info.gz sieve.info.gz \
+ebrowse.info.gz htmlfontify.info.gz smtpmail.info.gz \
+ede.info.gz idlwave.info.gz speedbar.info.gz \
+ediff.info.gz ido.info.gz srecode.info.gz \
+edt.info.gz info.gz.info.gz todo-mode.info.gz \
+efaq.info.gz mairix-el.info.gz tramp.info.gz \
+efaq-w32.info.gz message.info.gz url.info.gz \
+eieio.info.gz mh-e.info.gz vhdl-mode.info.gz \
+eintr.info.gz newsticker.info.gz viper.info.gz \
+elisp.info.gz nxml-mode.info.gz vip.info.gz \
+emacs-gnutls.info.gz octave-mode.info.gz widget.info.gz \
+emacs.info.gz org.info.gz wisent.info.gz \
+emacs-mime.info.gz pcl-cvs.info.gz woman.info.gz
BUILDDEPS = texinfo
LIBDEPS = ncurses
@@ -68,3 +73,4 @@
include ../../../gar/gar.lib/auto.mk
include ../../../gar/gar.lib/info.mk
include config.mk
+
=== modified file 'pkg/gnu/gettext/Makefile'
--- a/pkg/gnu/gettext/Makefile 2016-06-17 19:08:15 +0000
+++ b/pkg/gnu/gettext/Makefile 2017-11-26 21:24:45 +0000
@@ -49,3 +49,5 @@
CONFIGURE_ARGS += --with-libglib-2.0-prefix=$(prefix) \
--with-libiconv-prefix=$(prefix) \
--with-libncurses-prefix=$(prefix)
+
+
=== modified file 'pkg/gnu/gv/Makefile'
--- a/pkg/gnu/gv/Makefile 2016-06-17 19:08:15 +0000
+++ b/pkg/gnu/gv/Makefile 2017-11-26 21:24:45 +0000
@@ -14,6 +14,9 @@
#
# You should have received a copy of the GNU General Public License
# along with GSRC. If not, see <http://www.gnu.org/licenses/>.
+#
+#
+# Send bug reports and comments about GSRC problems to address@hidden
NAME = GV
GARNAME = gv
@@ -33,6 +36,7 @@
DISTFILES = $(DISTNAME).tar.gz
SIGFILES = $(DISTNAME).tar.gz.sig
+# HINT: apt install xaw3dg-dev
BUILDDEPS = ghostscript
LIBDEPS =
@@ -43,3 +47,5 @@
include config.mk
PATCHOPTS = -p0
+
+
=== modified file 'pkg/gnu/parallel/Makefile'
--- a/pkg/gnu/parallel/Makefile 2017-11-22 22:52:20 +0000
+++ b/pkg/gnu/parallel/Makefile 2017-11-26 21:24:45 +0000
@@ -40,6 +40,7 @@
LIBDEPS =
######################################################################
+# to do ; info docs
include ../../../gar/gar.lib/auto.mk
include config.mk
=== modified file 'pkg/other/zlib/Makefile'
--- a/pkg/other/zlib/Makefile 2017-02-11 00:56:47 +0000
+++ b/pkg/other/zlib/Makefile 2017-11-26 21:24:45 +0000
@@ -1,5 +1,5 @@
-# Copyright © 2017 Carl Hansen address@hidden
+# Copyright © 2017 Carl Hansen <address@hidden>
#
# This file is part of GSRC, the GNU Source Release Collection.
#
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