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Re: [Getfem-users] Getfem in parallel, run error


From: Yves Renard
Subject: Re: [Getfem-users] Getfem in parallel, run error
Date: Tue, 11 Jun 2013 14:19:40 +0200
User-agent: Mozilla/5.0 (X11; Linux x86_64; rv:17.0) Gecko/20130330 Thunderbird/17.0.5

Dear Guerric,

Can you try again without the automatic refinement option in the file elastostatic.param (REFINE = 0).
I think the computation of a posteriori error criterion is not well parallelized (I planned to work on the stabilization of the parallelization on a near future).

Yves.


Le 10/06/2013 10:45, Guerric Beaugrand a écrit :
Dear Getfem users,

I think I need your help. I have two processor core, I successfully compiled the library in parallel mode (mpich2, mumps 4.10) and when I run the elastostatic file with the command:
mpirun-np 2. / elastostatic. / elastostatic.param
I have the following errors:

####################################################################
min = 2.22462e-06
Nb elt to be refined : 392
Input Error: Incorrect ncuts.
Partition time 0.00189495
Trace 2 in getfem_models.cc, line 1827: Mass term assembly for Dirichlet condition
Trace 2 in getfem_models.cc, line 1869: Source term assembly for Dirichlet condition
Input Error: Incorrect ncuts.
Partition time 0.0017879
Total number of variables : 8980
Trace 2 in getfem_models.cc, line 3265: Stiffness matrix assembly for isotropic linearized elasticity
terminate called after throwing an instance of 'gmm::gmm_error'
  what():  Error in getfem_assembling_tensors.cc, line 1818 : 
error: the convex 683 is not part of the mesh
Total number of variables : 8980

=====================================================================================
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   EXIT CODE: 134
=   CLEANING UP REMAINING PROCESSES
=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
=====================================================================================
APPLICATION TERMINATED WITH THE EXIT STRING: Aborted (signal 6)
####################################################################

I tried several version of metis, but it changes nothing. I saw Daniele Bettella (https://mail.gna.org/public/getfem-users/2008-07/msg00006.html) had had the same problem, but the answer is not in the archives.

Someone already solved this problem? Any ideas?

Thank you in advance,

regards,
Guerric


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  Yves Renard (address@hidden)       tel : (33) 04.72.43.87.08
  Pole de Mathematiques, INSA-Lyon             fax : (33) 04.72.43.85.29
  20, rue Albert Einstein
  69621 Villeurbanne Cedex, FRANCE
  http://math.univ-lyon1.fr/~renard

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