Re: [Getfem-users] help: installation of the MATLAB interface (MATLAB 2009b) on ubuntu 10.10 64bit

[Zaiwen Wen]

Dear Mirko:

Thank you very much for the help. 

I updated to MATLAB 2010b (on 64bit unbuntu 10.10) and still encountered the same error. Enclosed please find the output of my installation.

I also noticed that the installation of the matlab toolbox "getfem_toolbox" failed.

/usr/bin/install -c -m 644 -t /home/wenzw/software/matlab2010b/toolbox/getfem_toolbox/private/ ./private/*.m
/usr/bin/install: accessing `/home/wenzw/software/matlab2010b/toolbox/getfem_toolbox/private/': No such file or directory

This problem can be easily resolved by make a directory "private" under "getfem_toolbox" manually.

Best Regards!
Zaiwen



On Mon, Jan 3, 2011 at 6:23 AM, Mirko Windhoff <address@hidden> wrote:

> Dear GetFEM users,
>
> I now got a version of MATLAB 2009b (on 64bit ubuntu 10.10) and I can
> confirm, that make check fails. In my case it crashes MATLAB. For the
> MATLAB versions 2008 and 2010 it works, so I don't depend on it. As I

> don't have too much time now, I can't search for the reason, but I can
> provide ssh-access to a machine with MATLAB 2009b, if one of the
> developers is interested to fix this.
>
> Regards,

> Mirko
>
> 2010/12/28 Zaiwen Wen <address@hidden>:
>> Dear Mirko:
>>
>> Thank you very much for the response and suggestion.  I have tried the

>> tips, but the same error still happened.
>>
>> I will definitely let you know once I solved the problem.
>>
>> Best Regards!
>> Zaiwen
>>
>>
>>

>> On Tue, Dec 28, 2010 at 8:26 AM, Mirko Windhoff
>> <address@hidden> wrote:
>>> Dear Zaiwen,
>>>
>>> I don't have Matlab 2009b, so I'm sorry that I cannot test it or

>>> reproduce your problem. For me GetFEM works with Ubuntu 10.10 64bit
>>> and Matlab 2010a. So here I can give only some general tips:
>>> Try make clean or recheckout the sources. If you have libmumps

>>> installed on your system, add --enable-mumps=no to the configure
>>> string. Make sure, that the correct compiler version is used in the
>>> $MATLAB_ROOT/bin/mexopts.sh
>>>

>>> Has anybody better ideas?
>>> If you found a solution I would appreciate if you would add it to the
>>> build instructions ;)
>>> Mirko
>>>
>>> 2010/12/27 Zaiwen Wen <address@hidden>:

>>>> Dear getfem users:
>>>>
>>>> I can install and run getfem successfully in MATLAB 2009b on Ubuntu
>>>> 10.10 32bit  by following the steps of Mirko Windhoff. However, I had

>>>> trouble in MATLAB 2009b on Ubuntu 10.10 64bit. There was no error
>>>> during "make".  But the MATLAB interface did not work:
>>>>
>>>> address@hidden:~/code/PDE/getfem$ make check

>>>> ......
>>>> running checks...
>>>>  srcdir='.'
>>>>  export MATLAB_ROOT=/home/wenzw/software/matlab
>>>>  export MATLABPATH=/home/wenzw/code/PDE/getfem/interface/tests/matlab/../../src/matlab:/home/wenzw/code/PDE/getfem/interface/tests/matlab/../../tests/matlab:.:./../../src/matlab

>>>> failure:
>>>> == check_integ [integration methods]            : FAILURE
>>>> == check_mesh_fem [mesh_fem manipulations]      : FAILURE
>>>> == check_asm [assembly routines]                : FAILURE

>>>> == check_solve                                  : FAILURE
>>>> == check_oo [pseudo object oriented interface]  : FAILURE
>>>> == check_slices [mesh slicing functions]        : FAILURE

>>>> == check_spmat [sparse matrix functions]        : FAILURE
>>>> == check_bricks [model bricks functions]        : FAILURE
>>>> == 8/11 tests FAILED
>>>> FAIL: ./check_all.sh

>>>> ==================
>>>> 1 of 1 test failed
>>>> ==================
>>>>
>>>> The errors in Matlab were:
>>>>>> check_integ

>>>> ??? Error using ==> gfassert at 13
>>>> AssertionFailed
>>>>
>>>> Error in ==> check_integ at 20
>>>>  gfassert('npt==[4 2 2 2]');

>>>>
>>>> My configurations were generated as follows:
>>>> ./configure --enable-matlab --disable-python --enable-superlu
>>>> --with-pic  --enable-qhull
>>>> --with-matlab-toolbox-dir=$MATLAB_ROOT/toolbox/getfem_toolbox

>>>> CC=gcc-4.2 CXX=g++-4.2 FC=gfortran-4.2
>>>>
>>>> I appreciate for any suggestion and comment!
>>>>
>>>> Thank you very much!
>>>> Zaiwen

>>>>
>>>> _______________________________________________
>>>> Getfem-users mailing list
>>>> address@hidden
>>>> https://mail.gna.org/listinfo/getfem-users

>>>>
>>>
>>
>

install-output.txt
Description: Text document