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[Getfem-commits] (no subject)
|
From: |
Konstantinos Poulios |
|
Subject: |
[Getfem-commits] (no subject) |
|
Date: |
Sat, 14 Jul 2018 02:17:07 -0400 (EDT) |
branch: code-cleanup
commit baff2388b059bc4b1efe672e2e809743e429742e
Merge: 73ae4aa 2ac1342
Author: Konstantinos Poulios <address@hidden>
Date: Sat Jul 14 08:01:03 2018 +0200
Merge branch 'master' into code-cleanup
bin/extract_doc | 4 +-
configure.ac | 4 +-
.../test_plasticity/test_small_strain_plasticity.m | 10 +-
.../test_small_strain_plasticity.py | 10 +-
doc/doxygen/Doxyfile | 2 +-
doc/sphinx/source/.templates/download.html | 4 +-
doc/sphinx/source/.templates/indexcontent.html | 4 +-
doc/sphinx/source/biblio.rst | 2 +-
doc/sphinx/source/glossary.rst | 4 +-
doc/sphinx/source/project/contribute.rst | 10 +-
doc/sphinx/source/project/femdesc.rst | 2 +-
.../source/project/images/getfem_structure.svg | 2 +-
.../source/project/libdesc_high_gen_assemb.rst | 6 +-
doc/sphinx/source/project/libdesc_mim.rst | 2 +-
doc/sphinx/source/replaces.txt | 4 +-
doc/sphinx/source/tutorial/basic_usage.rst | 2 +-
doc/sphinx/source/tutorial/thermo_coupling.rst | 31 +-
doc/sphinx/source/tutorial/wheel.rst | 14 +-
doc/sphinx/source/userdoc/gasm_high.rst | 120 +-
doc/sphinx/source/userdoc/interMM.rst | 8 +-
doc/sphinx/source/userdoc/model_Mindlin_plate.rst | 4 +-
doc/sphinx/source/userdoc/model_Nitsche.rst | 16 +-
.../model_contact_friction_large_sliding.rst | 16 +-
doc/sphinx/source/userdoc/model_fourier_robin.rst | 3 +-
.../source/userdoc/model_generic_assembly.rst | 17 +-
.../source/userdoc/model_generic_elliptic.rst | 2 +-
.../source/userdoc/model_nonlinear_elasticity.rst | 2 +-
.../userdoc/model_plasticity_small_strain.rst | 4 +-
doc/sphinx/source/userdoc/model_source_term.rst | 2 +-
.../source/userdoc/model_time_integration.rst | 8 +-
doc/sphinx/source/userdoc/parallel.rst | 8 +-
doc/sphinx/source/userdoc/xfem.rst | 2 +-
doc/sphinx/source/whatsnew/4.2.rst | 4 +-
doc/sphinx/source/whatsnew/4.3.rst | 7 +-
doc/sphinx/source/whatsnew/5.0.rst | 11 +-
doc/sphinx/source/whatsnew/5.1.rst | 6 +-
doc/sphinx/source/whatsnew/5.2.rst | 2 +-
doc/sphinx/source/whatsnew/5.3.rst | 26 +
doc/sphinx/source/whatsnew/index.rst | 1 +
extract_gmm++ | 2 +-
interface/src/gf_asm.cc | 89 +-
interface/src/gf_mesh.cc | 2 +-
interface/src/gf_mesh_fem_set.cc | 87 +-
interface/src/gf_model_set.cc | 160 +-
interface/src/python/getfem_python.c | 6 +-
interface/src/python/setup.py.in | 2 +-
interface/tests/matlab/check_plasticity.m | 4 +-
.../tests/matlab/demo_Mindlin_Reissner_plate.m | 10 +-
.../tests/matlab/demo_Nitsche_contact_by_hand.m | 20 +-
interface/tests/matlab/demo_continuation.m | 3 +-
interface/tests/matlab/demo_crack.m | 4 +-
interface/tests/matlab/demo_dynamic_contact.m | 4 +-
interface/tests/matlab/demo_dynamic_plasticity.m | 2 +-
.../matlab/demo_dynamic_plasticity_with_contact.m | 2 +-
interface/tests/matlab/demo_elasticity.m | 2 +-
interface/tests/matlab/demo_laplacian.m | 2 +-
interface/tests/matlab/demo_laplacian_DG.m | 10 +-
interface/tests/matlab/demo_laplacian_pyramid.m | 2 +-
.../tests/matlab/demo_large_sliding_contact.m | 20 +-
interface/tests/matlab/demo_nonlinear_elasticity.m | 20 +-
interface/tests/matlab/demo_periodic_laplacian.m | 4 +-
interface/tests/matlab/demo_plasticity.m | 2 +-
.../demo_thermo_elasticity_electrical_coupling.m | 6 +-
.../tests/matlab/test1_nitsche_large_sliding.m | 8 +-
.../tests/matlab/test2_nitsche_large_sliding.m | 30 +-
interface/tests/matlab/tutorial1.m | 4 +-
interface/tests/meshes/Makefile.am | 3 +-
interface/tests/meshes/mixed_mesh.gmf | 2442 ++++++++
interface/tests/python/Makefile.am | 10 +-
interface/tests/python/check_asm.py | 133 +-
interface/tests/python/check_export.py | 2 +-
interface/tests/python/check_mixed_mesh.py | 193 +
interface/tests/python/check_secondary_domain.py | 91 +
interface/tests/python/demo_crack.py | 4 +-
.../python/demo_cracked_thermo_elastic_body.py | 284 +
.../tests/python/demo_finite_strain_plasticity.py | 318 +
.../python/demo_finite_strain_plasticity_3D.py | 316 +
interface/tests/python/demo_laplacian_DG.py | 2 +-
.../tests/python/demo_large_sliding_contact.py | 20 +-
interface/tests/python/demo_navier_stokes.py | 4 +-
.../tests/python/demo_nonlinear_elasticity.py | 12 +-
interface/tests/python/demo_phase_field.py | 234 +
.../demo_thermo_elasticity_electrical_coupling.py | 6 +-
interface/tests/python/demo_wheel_contact.py | 6 +-
internal_tools/simplexification_refelt.cc | 2 +-
src/Makefile.am | 2 +-
src/bgeot_convex_ref.cc | 40 +-
src/bgeot_convex_ref_simplexified.cc | 14 +-
src/bgeot_convex_structure.cc | 42 +-
src/bgeot_geometric_trans.cc | 80 +-
src/bgeot_geotrans_inv.cc | 114 +-
src/bgeot_mesh_structure.cc | 4 +-
src/bgeot_poly_composite.cc | 254 +-
src/getfem/bgeot_convex_ref.h | 17 +-
src/getfem/bgeot_convex_structure.h | 15 +-
src/getfem/bgeot_ftool.h | 4 +-
src/getfem/bgeot_geometric_trans.h | 28 +-
src/getfem/bgeot_poly.h | 366 +-
src/getfem/bgeot_poly_composite.h | 16 +-
src/getfem/getfem_fem.h | 40 +-
src/getfem/getfem_generic_assembly.h | 79 +-
.../getfem_generic_assembly_compile_and_exec.h | 32 +-
src/getfem/getfem_generic_assembly_tree.h | 36 +-
src/getfem/getfem_im_list.h | 6046 ++++++++++----------
src/getfem/getfem_mesh.h | 43 +-
src/getfem/getfem_mesh_fem.h | 44 +-
src/getfem/getfem_mesh_im_level_set.h | 4 +
src/getfem/getfem_models.h | 132 +-
src/getfem/getfem_regular_meshes.h | 2 +-
src/getfem_contact_and_friction_common.cc | 4 +-
src/getfem_export.cc | 27 +-
src/getfem_fem.cc | 320 +-
src/getfem_fem_composite.cc | 8 +-
src/getfem_fem_level_set.cc | 4 +-
src/getfem_generic_assembly_compile_and_exec.cc | 1442 +++--
...fem_generic_assembly_functions_and_operators.cc | 10 +-
src/getfem_generic_assembly_interpolation.cc | 171 +-
src/getfem_generic_assembly_semantic.cc | 328 +-
src/getfem_generic_assembly_tree.cc | 80 +-
src/getfem_generic_assembly_workspace.cc | 54 +-
src/getfem_global_function.cc | 38 +-
src/getfem_import.cc | 23 +-
src/getfem_integration.cc | 20 +-
src/getfem_integration_composite.cc | 2 +-
src/getfem_level_set.cc | 30 +-
src/getfem_mesh.cc | 272 +-
src/getfem_mesh_fem.cc | 92 +-
src/getfem_mesh_im_level_set.cc | 31 +-
src/getfem_mesh_level_set.cc | 4 +-
src/getfem_mesh_region.cc | 263 +-
src/getfem_models.cc | 212 +-
src/getfem_plasticity.cc | 17 +-
src/getfem_regular_meshes.cc | 4 +-
tests/laplacian_with_bricks.cc | 3 +-
tests/test_assembly.cc | 5 +-
tests/test_continuation.cc | 3 +-
tests/thermo_elasticity_electrical_coupling.cc | 6 +-
137 files changed, 10646 insertions(+), 5256 deletions(-)