Re: [Orgmode] [babel] error running source code? [6.34trans (release_6.34c.6.gcae0.dirty)]

[Eric Schulte]

Hi Martin,

Thanks for reporting this bug.  I just pushed up a fix.

Best -- Eric

"Martin G. Skjæveland" <address@hidden> writes:

> Hi,
>
> I pulled a fresh copy of org-mode this morning and got an error I did
> not have before the pull.
>
> When I export the following to pdf
>
> --------------------------------------------------begin
> * test
>
> #+begin_src java -n :exports none :tangle test.java
> private void abcdefghi throws IOException
> #+end_src
>
> #+begin_src sh :results output :exports results
> javac -cp "lib/jena/lib/*:lib/pellet/lib/*" test.java
> #+end_src
> --------------------------------------------------end
>
> the error
>
>   Invalid search bound (wrong side of point)
>
> occurs. The backtrace is attached. Note that I do not get the error
> when reducing the string "abcdefghi" to "abcdefgh".
>
> If I export the document without loading babel, I get no errors.
>
> Let me know if I should do some git bisecting.
>
> Thanks!
> Martin
>
> ------------
>
> Emacs  : GNU Emacs 23.1.50.1 (i486-pc-linux-gnu, GTK+ Version 2.18.0)
>  of 2009-09-27 on palmer, modified by Debian
> Package: Org-mode version 6.34trans (release_6.34c.6.gcae0.dirty)
>
> current state:
> ==============
> (setq
>  org-export-latex-after-initial-vars-hook '(org-beamer-after-initial-vars)
>  org-metaup-hook '(org-babel-load-in-session-maybe)
>  org-after-todo-state-change-hook '(org-clock-out-if-current)
>  org-babel-interpreters '("tex" "n3" "xml" "java" "python" "dot" "sh"
>                         "emacs-lisp")
>  org-export-latex-format-toc-function 'org-export-latex-format-toc-default
>  org-export-preprocess-hook '((lambda nil
>                              (org-set-local
>                               (quote org-complex-heading-regexp)
>                               "^\\(\\*+\\)[
> ]+\\(?:\\(TODO\\|DONE\\)\\>\\)?\\(?:[ ]*\\(\\[#.\\]\\)\\)?[
> ]*\\(.*?\\)\\(?:[ ]+\\(:[[:alnum:]_@:]+:\\)\\)?[      ]*$")
>                              )
>                             org-export-blocks-preprocess)
>  org-tab-first-hook '(org-babel-hide-result-toggle-maybe
>                     org-hide-block-toggle-maybe)
>  org-src-mode-hook '(org-src-mode-configure-edit-buffer)
>  org-confirm-shell-link-function 'yes-or-no-p
>  org-export-first-hook '(org-beamer-initialize-open-trackers)
>  org-agenda-before-write-hook '(org-agenda-add-entry-text)
>  org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers
>                 org-cycle-show-empty-lines
>                 org-optimize-window-after-visibility-change)
>  org-export-preprocess-before-normalizing-links-hook
> (org-remove-file-link-modifiers)
>  org-export-latex-hyperref-format "\\myhref{%s}{%s}"
>  org-use-speed-commands t
>  org-mode-hook '((lambda nil
>                 (org-add-hook (quote change-major-mode-hook)
>                  (quote org-show-block-all) (quote append) (quote local))
>                 )
>                (lambda nil
>                 (org-add-hook (quote change-major-mode-hook)
>                  (quote org-babel-show-result-all) (quote append)
>                  (quote local))
>                 )
>                org-babel-result-hide-spec org-babel-hide-all-hashes
>                #[nil "\300\301\302\303\304$\207"
>                  [org-add-hook change-major-mode-hook org-show-block-all
>                   append local]
>                  5]
>                )
>  org-ctrl-c-ctrl-c-hook '(org-babel-lob-execute-maybe
> org-babel-hash-at-point
>                         org-babel-execute-src-block-maybe)
>  org-confirm-elisp-link-function 'yes-or-no-p
>  org-export-interblocks '((lob org-babel-exp-lob-one-liners)
>                         (src org-babel-exp-inline-src-blocks))
>  org-occur-hook '(org-first-headline-recenter)
>  org-from-is-user-regexp "\\<Martin G\\. Skjæveland\\>"
>  org-export-preprocess-before-selecting-backend-code-hook
> (org-beamer-select-beamer-code)
>  org-export-latex-final-hook '(org-beamer-amend-header org-beamer-fix-toc
>                              org-beamer-auto-fragile-frames
>                              org-beamer-place-default-actions-for-lists)
>  org-metadown-hook '(org-babel-pop-to-session-maybe)
>  org-export-blocks '((src org-babel-exp-src-blocks nil)
>                    (comment org-export-blocks-format-comment t)
>                    (ditaa org-export-blocks-format-ditaa nil)
>                    (dot org-export-blocks-format-dot nil))
>  )
>
> Debugger entered--Lisp error: (error "Invalid search bound (wrong side of 
> point)")
>   re-search-backward("^[      ]*#\\+begin_src[        
> ]+\\(tex\\|n3\\|xml\\|java\\|python\\|dot\\|sh\\|emacs-lisp\\)[         
> ]*\\([^\":\n]*\"[^\"\n*]*\"[^\":\n]*\\|[^\":\n]*\\)\\([^\n]*\\)\n\\([^]+?\\)#\\+end_src"
>  123 t)
>   (and (re-search-backward org-babel-src-block-regexp progress-marker t) 
> (setq progress-marker (match-end 0)) (org-babel-exp-do-export 
> (org-babel-get-src-block-info) (quote block)))
>   (or (and (re-search-backward org-babel-src-block-regexp progress-marker t) 
> (setq progress-marker ...) (org-babel-exp-do-export ... ...)) (save-excursion 
> (forward-line 0) (and ... ... ...)) (and (re-search-backward org-block-regexp 
> progress-marker t) (setq progress-marker ...) (match-string 0)) (error 
> "Unmatched block [bug in `org-babel-exp-src-blocks']."))
>   org-babel-exp-src-blocks(#("javac -cp \"lib/jena/lib/*:lib/pellet/lib/*\" 
> test.java" 0 53 (fontified nil font-lock-fontified t)) #("sh" 0 2 
> (font-lock-fontified t fontified nil)) #(":results" 0 8 (font-lock-fontified 
> t fontified nil)) #("output" 0 6 (font-lock-fontified t fontified nil)) 
> #(":exports" 0 8 (font-lock-fontified t fontified nil)) #("results" 0 7 
> (font-lock-fontified t fontified nil)))
>   apply(org-babel-exp-src-blocks #("javac -cp 
> \"lib/jena/lib/*:lib/pellet/lib/*\" test.java" 0 53 (fontified nil 
> font-lock-fontified t)) (#("sh" 0 2 (font-lock-fontified t fontified nil)) 
> #(":results" 0 8 (font-lock-fontified t fontified nil)) #("output" 0 6 
> (font-lock-fontified t fontified nil)) #(":exports" 0 8 (font-lock-fontified 
> t fontified nil)) #("results" 0 7 (font-lock-fontified t fontified nil))))
>   (if (memq type org-export-blocks-witheld) "" (apply func body headers))
>   (progn (if (memq type org-export-blocks-witheld) "" (apply func body 
> headers)))
>   (unwind-protect (progn (if ... "" ...)) (set-match-data 
> save-match-data-internal (quote evaporate)))
>   (let ((save-match-data-internal ...)) (unwind-protect (progn ...) 
> (set-match-data save-match-data-internal ...)))
>   (save-match-data (if (memq type org-export-blocks-witheld) "" (apply func 
> body headers)))
>   (replace-match (save-match-data (if ... "" ...)) t t)
>   (progn (replace-match (save-match-data ...) t t) (unless preserve-indent 
> (indent-code-rigidly ... ... indentation)))
>   (if (setq func (cadr ...)) (progn (replace-match ... t t) (unless 
> preserve-indent ...)))
>   (while (re-search-forward "^\\([    ]*\\)#\\+begin_\\(\\S-+\\)[     
> ]*\\(.*\\)?[\n]\\([^]*?\\)[\n][         ]*#\\+end_\\S-+.*" nil t) (setq 
> indentation (length ...)) (setq type (intern ...)) (setq headers 
> (save-match-data ...)) (setq body (match-string 4)) (setq preserve-indent (or 
> org-src-preserve-indentation ...)) (unless preserve-indent (setq body ...)) 
> (unless (memq type types) (setq types ...)) (save-match-data (interblock 
> start ...)) (if (setq func ...) (progn ... ...)) (setq start (match-end 0)))
>   (progn (fset (quote interblock) (function* ...)) (goto-char (point-min)) 
> (setq start (point)) (while (re-search-forward "^\\([      
> ]*\\)#\\+begin_\\(\\S-+\\)[     ]*\\(.*\\)?[\n]\\([^]*?\\)[\n][         
> ]*#\\+end_\\S-+.*" nil t) (setq indentation ...) (setq type ...) (setq 
> headers ...) (setq body ...) (setq preserve-indent ...) (unless 
> preserve-indent ...) (unless ... ...) (save-match-data ...) (if ... ...) 
> (setq start ...)) (interblock start (point-max)))
>   (unwind-protect (progn (fset ... ...) (goto-char ...) (setq start ...) 
> (while ... ... ... ... ... ... ... ... ... ... ...) (interblock start ...)) 
> (if --cl-letf-bound-- (fset ... --cl-letf-save--) (fmakunbound ...)))
>   (let* ((--cl-letf-bound-- ...) (--cl-letf-save-- ...)) (unwind-protect 
> (progn ... ... ... ... ...) (if --cl-letf-bound-- ... ...)))
>   (letf ((... ...)) (goto-char (point-min)) (setq start (point)) (while 
> (re-search-forward "^\\([     ]*\\)#\\+begin_\\(\\S-+\\)[     
> ]*\\(.*\\)?[\n]\\([^]*?\\)[\n][         ]*#\\+end_\\S-+.*" nil t) (setq 
> indentation ...) (setq type ...) (setq headers ...) (setq body ...) (setq 
> preserve-indent ...) (unless preserve-indent ...) (unless ... ...) 
> (save-match-data ...) (if ... ...) (setq start ...)) (interblock start 
> (point-max)))
>   (letf* ((... ...)) (goto-char (point-min)) (setq start (point)) (while 
> (re-search-forward "^\\([    ]*\\)#\\+begin_\\(\\S-+\\)[     
> ]*\\(.*\\)?[\n]\\([^]*?\\)[\n][         ]*#\\+end_\\S-+.*" nil t) (setq 
> indentation ...) (setq type ...) (setq headers ...) (setq body ...) (setq 
> preserve-indent ...) (unless preserve-indent ...) (unless ... ...) 
> (save-match-data ...) (if ... ...) (setq start ...)) (interblock start 
> (point-max)))
>   (flet ((interblock ... ...)) (goto-char (point-min)) (setq start (point)) 
> (while (re-search-forward "^\\([  ]*\\)#\\+begin_\\(\\S-+\\)[     
> ]*\\(.*\\)?[\n]\\([^]*?\\)[\n][         ]*#\\+end_\\S-+.*" nil t) (setq 
> indentation ...) (setq type ...) (setq headers ...) (setq body ...) (setq 
> preserve-indent ...) (unless preserve-indent ...) (unless ... ...) 
> (save-match-data ...) (if ... ...) (setq start ...)) (interblock start 
> (point-max)))
>   (let ((case-fold-search t) (types ...) indentation type func start body 
> headers preserve-indent progress-marker) (flet (...) (goto-char ...) (setq 
> start ...) (while ... ... ... ... ... ... ... ... ... ... ...) (interblock 
> start ...)))
>   (save-window-excursion (let (... ... indentation type func start body 
> headers preserve-indent progress-marker) (flet ... ... ... ... ...)))
>   org-export-blocks-preprocess()
>   run-hooks(org-export-preprocess-hook)
>   (save-current-buffer (set-buffer (get-buffer-create " org-mode-tmp")) 
> (erase-buffer) (insert string) (setq case-fold-search t) (let (...) 
> (remove-text-properties ... ... ...)) (org-export-kill-licensed-text) (let 
> (...) (org-mode)) (setq case-fold-search t) (org-install-letbind) (run-hooks 
> (quote org-export-preprocess-hook)) (org-export-preprocess-apply-macros) 
> (run-hooks (quote org-export-preprocess-after-macros-hook)) (untabify 
> (point-min) (point-max)) (org-export-handle-include-files) (run-hooks (quote 
> org-export-preprocess-after-include-files-hook)) 
> (org-export-remove-archived-trees archived-trees) 
> (org-export-remove-comment-blocks-and-subtrees) 
> (org-export-handle-export-tags (plist-get parameters :select-tags) (plist-get 
> parameters :exclude-tags)) (run-hooks (quote 
> org-export-preprocess-after-tree-selection-hook)) 
> (org-export-replace-src-segments-and-examples backend) 
> (org-export-protect-colon-examples) (when (plist-get parameters :footnotes) 
> (org-footnote-normalize nil t)) (setq target-alist 
> (org-export-define-heading-targets target-alist)) 
> (org-export-remove-or-extract-drawers drawers (plist-get parameters :drawers) 
> backend) (when (plist-get parameters :skip-before-1st-heading) (goto-char 
> ...) (when ... ... ... ...)) (when (plist-get parameters :add-text) 
> (goto-char ...) (insert ... "\n")) (org-export-remove-headline-metadata 
> parameters) (setq target-alist (org-export-handle-invisible-targets 
> target-alist)) (run-hooks (quote 
> org-export-preprocess-before-selecting-backend-code-hook)) 
> (org-export-select-backend-specific-text backend) 
> (org-export-protect-quoted-subtrees) (org-export-remove-clock-lines) 
> (org-export-protect-verbatim) (org-export-mark-blockquote-verse-center) 
> (run-hooks (quote org-export-preprocess-after-blockquote-hook)) (unless 
> (plist-get parameters :timestamps) (org-export-remove-timestamps)) (setq 
> target-alist (org-export-attach-captions-and-attributes backend 
> target-alist)) (org-export-mark-radio-links) 
> (org-export-concatenate-multiline-links) (run-hooks (quote 
> org-export-preprocess-before-normalizing-links-hook)) 
> (org-export-normalize-links) (org-export-target-internal-links target-alist) 
> (when (plist-get parameters :emph-multiline) 
> (org-export-concatenate-multiline-emphasis)) (when 
> org-export-table-remove-special-lines 
> (org-export-remove-special-table-lines)) (run-hooks (quote 
> org-export-preprocess-before-backend-specifics-hook)) (when latexp (require 
> ... nil) (org-export-latex-preprocess parameters)) (when asciip 
> (org-export-ascii-preprocess parameters)) (when htmlp 
> (org-export-html-preprocess parameters)) (when docbookp (require ... nil) 
> (org-export-docbook-preprocess parameters)) ...)
>   (with-current-buffer (get-buffer-create " org-mode-tmp") (erase-buffer) 
> (insert string) (setq case-fold-search t) (let (...) (remove-text-properties 
> ... ... ...)) (org-export-kill-licensed-text) (let (...) (org-mode)) (setq 
> case-fold-search t) (org-install-letbind) (run-hooks (quote 
> org-export-preprocess-hook)) (org-export-preprocess-apply-macros) (run-hooks 
> (quote org-export-preprocess-after-macros-hook)) (untabify (point-min) 
> (point-max)) (org-export-handle-include-files) (run-hooks (quote 
> org-export-preprocess-after-include-files-hook)) 
> (org-export-remove-archived-trees archived-trees) 
> (org-export-remove-comment-blocks-and-subtrees) 
> (org-export-handle-export-tags (plist-get parameters :select-tags) (plist-get 
> parameters :exclude-tags)) (run-hooks (quote 
> org-export-preprocess-after-tree-selection-hook)) 
> (org-export-replace-src-segments-and-examples backend) 
> (org-export-protect-colon-examples) (when (plist-get parameters :footnotes) 
> (org-footnote-normalize nil t)) (setq target-alist 
> (org-export-define-heading-targets target-alist)) 
> (org-export-remove-or-extract-drawers drawers (plist-get parameters :drawers) 
> backend) (when (plist-get parameters :skip-before-1st-heading) (goto-char 
> ...) (when ... ... ... ...)) (when (plist-get parameters :add-text) 
> (goto-char ...) (insert ... "\n")) (org-export-remove-headline-metadata 
> parameters) (setq target-alist (org-export-handle-invisible-targets 
> target-alist)) (run-hooks (quote 
> org-export-preprocess-before-selecting-backend-code-hook)) 
> (org-export-select-backend-specific-text backend) 
> (org-export-protect-quoted-subtrees) (org-export-remove-clock-lines) 
> (org-export-protect-verbatim) (org-export-mark-blockquote-verse-center) 
> (run-hooks (quote org-export-preprocess-after-blockquote-hook)) (unless 
> (plist-get parameters :timestamps) (org-export-remove-timestamps)) (setq 
> target-alist (org-export-attach-captions-and-attributes backend 
> target-alist)) (org-export-mark-radio-links) 
> (org-export-concatenate-multiline-links) (run-hooks (quote 
> org-export-preprocess-before-normalizing-links-hook)) 
> (org-export-normalize-links) (org-export-target-internal-links target-alist) 
> (when (plist-get parameters :emph-multiline) 
> (org-export-concatenate-multiline-emphasis)) (when 
> org-export-table-remove-special-lines 
> (org-export-remove-special-table-lines)) (run-hooks (quote 
> org-export-preprocess-before-backend-specifics-hook)) (when latexp (require 
> ... nil) (org-export-latex-preprocess parameters)) (when asciip 
> (org-export-ascii-preprocess parameters)) (when htmlp 
> (org-export-html-preprocess parameters)) (when docbookp (require ... nil) 
> (org-export-docbook-preprocess parameters)) ...)
>   (let* ((htmlp ...) (asciip ...) (latexp ...) (docbookp ...) (backend ...) 
> (archived-trees ...) (inhibit-read-only t) (drawers org-drawers) 
> (outline-regexp "\\*+ ") target-alist rtn) (setq org-export-target-aliases 
> nil) (setq org-export-preferred-target-alist nil) (setq org-export-code-refs 
> nil) (with-current-buffer (get-buffer-create " org-mode-tmp") (erase-buffer) 
> (insert string) (setq case-fold-search t) (let ... ...) 
> (org-export-kill-licensed-text) (let ... ...) (setq case-fold-search t) 
> (org-install-letbind) (run-hooks ...) (org-export-preprocess-apply-macros) 
> (run-hooks ...) (untabify ... ...) (org-export-handle-include-files) 
> (run-hooks ...) (org-export-remove-archived-trees archived-trees) 
> (org-export-remove-comment-blocks-and-subtrees) 
> (org-export-handle-export-tags ... ...) (run-hooks ...) 
> (org-export-replace-src-segments-and-examples backend) 
> (org-export-protect-colon-examples) (when ... ...) (setq target-alist ...) 
> (org-export-remove-or-extract-drawers drawers ... backend) (when ... ... ...) 
> (when ... ... ...) (org-export-remove-headline-metadata parameters) (setq 
> target-alist ...) (run-hooks ...) (org-export-select-backend-specific-text 
> backend) (org-export-protect-quoted-subtrees) (org-export-remove-clock-lines) 
> (org-export-protect-verbatim) (org-export-mark-blockquote-verse-center) 
> (run-hooks ...) (unless ... ...) (setq target-alist ...) 
> (org-export-mark-radio-links) (org-export-concatenate-multiline-links) 
> (run-hooks ...) (org-export-normalize-links) 
> (org-export-target-internal-links target-alist) (when ... ...) (when 
> org-export-table-remove-special-lines ...) (run-hooks ...) (when latexp ... 
> ...) (when asciip ...) (when htmlp ...) (when docbookp ... ...) ...) 
> (kill-buffer " org-mode-tmp") rtn)
>   org-export-preprocess-string(#("* test\n\n#+begin_src java -n :exports none 
> :tangle test.java          \nprivate void abcdefghi throws IOException 
> \n#+end_src\n\n#+begin_src sh :results output :exports results\njavac -cp 
> \"lib/jena/lib/*:lib/pellet/lib/*\" test.java\n#+end_src\n" 0 2 (fontified 
> nil) 2 6 (fontified nil) 6 8 (fontified nil) 8 69 (fontified nil 
> font-lock-fontified t) 69 70 (fontified nil font-lock-fontified t) 70 112 
> (fontified nil font-lock-fontified t) 112 113 (fontified nil 
> font-lock-fontified t) 113 122 (fontified nil font-lock-fontified t) 122 124 
> (fontified nil) 124 171 (fontified nil font-lock-fontified t) 171 172 
> (fontified nil font-lock-fontified t) 172 225 (fontified nil 
> font-lock-fontified t) 225 226 (fontified nil font-lock-fontified t) 226 235 
> (fontified nil font-lock-fontified t) 235 236 (fontified nil)) 
> :emph-multiline t :for-LaTeX t :comments nil :tags not-in-toc :priority nil 
> :footnotes t :drawers nil :timestamps t :todo-keywords t :add-text nil 
> :skip-before-1st-heading nil :select-tags ("export") :exclude-tags 
> ("noexport") :LaTeX-fragments nil)
>   org-export-as-latex(nil nil nil nil nil nil)
>   org-export-as-pdf(nil)
>   org-export-as-pdf-and-open(nil)
>   call-interactively(org-export-as-pdf-and-open nil nil)
>
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