GNU Parallel Bug Reports GNU Parallel 20170422 ('Санкт-Петербу́рг') has been released

[Ole Tange]

GNU Parallel 20170422 ('Санкт-Петербу́рг') has been released. It is
available for download at: http://ftpmirror.gnu.org/parallel/

Haiku of the month:

  Alias and vars
  export them more easily
  With env_parallel
    -- Ole Tange

New in this release:

* --halt supports done in addition to success and fail.

* parset will set variables in parallel in Bash.

* Perl 5.6 on Irix is no longer supported.

* Vote for GNU Parallel's community ads on
http://meta.unix.stackexchange.com/a/4356/2972
http://meta.askubuntu.com/a/16750/22307
http://meta.serverfault.com/a/9040/45704

* GNU Parallel was cited in: Halvade-RNA: Parallel variant calling
from transcriptomic data using MapReduce
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0174575

* GNU Parallel was cited in: StrAuto: automation and parallelization
of STRUCTURE analysis
http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1593-0

* GNU Parallel was cited in: Trespassing the Boundaries: Labeling
Temporal Bounds for Object Interactions in Egocentric Video
https://128.84.21.199/pdf/1703.09026.pdf

* GNU Parallel is used in: https://github.com/lucascbeyeler/zmbackup

* Using GNU Parallel
https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel

* Find and xargs and parallel
http://helpful.knobs-dials.com/index.php/Find_and_xargs_and_parallel#Parallel

* Quick Introduction to GNU Parallel
https://github.com/mlangill/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel

* Data science at the command line
https://www.slideshare.net/sharatsc/data-science-at-the-command-line

* Bedtools笔记 http://www.jianshu.com/p/67b0665490ac

* Bug fixes and man page updates.

GNU Parallel - For people who live life in the parallel lane.


= About GNU Parallel =

GNU Parallel is a shell tool for executing jobs in parallel using one
or more computers. A job can be a single command or a small script
that has to be run for each of the lines in the input. The typical
input is a list of files, a list of hosts, a list of users, a list of
URLs, or a list of tables. A job can also be a command that reads from
a pipe. GNU Parallel can then split the input and pipe it into
commands in parallel.

If you use xargs and tee today you will find GNU Parallel very easy to
use as GNU Parallel is written to have the same options as xargs. If
you write loops in shell, you will find GNU Parallel may be able to
replace most of the loops and make them run faster by running several
jobs in parallel. GNU Parallel can even replace nested loops.

GNU Parallel makes sure output from the commands is the same output as
you would get had you run the commands sequentially. This makes it
possible to use output from GNU Parallel as input for other programs.

You can find more about GNU Parallel at: http://www.gnu.org/s/parallel/

You can install GNU Parallel in just 10 seconds with: (wget -O -
pi.dk/3 || curl pi.dk/3/) | bash

Watch the intro video on http://www.youtube.com/playlist?list=PL284C9FF2488BC6D1

Walk through the tutorial (man parallel_tutorial). Your commandline
will love you for it.

When using programs that use GNU Parallel to process data for
publication please cite:

O. Tange (2011): GNU Parallel - The Command-Line Power Tool, ;login:
The USENIX Magazine, February 2011:42-47.

If you like GNU Parallel:

* Give a demo at your local user group/team/colleagues
* Post the intro videos on Reddit/Diaspora*/forums/blogs/
Identi.ca/Google+/Twitter/Facebook/Linkedin/mailing lists
* Get the merchandise https://www.gnu.org/s/parallel/merchandise.html
* Request or write a review for your favourite blog or magazine
* Request or build a package for your favourite distribution (if it is
not already there)
* Invite me for your next conference

If you use programs that use GNU Parallel for research:

* Please cite GNU Parallel in you publications (use --citation)

If GNU Parallel saves you money:

* (Have your company) donate to FSF https://my.fsf.org/donate/


= About GNU SQL =

GNU sql aims to give a simple, unified interface for accessing
databases through all the different databases' command line clients.
So far the focus has been on giving a common way to specify login
information (protocol, username, password, hostname, and port number),
size (database and table size), and running queries.

The database is addressed using a DBURL. If commands are left out you
will get that database's interactive shell.

When using GNU SQL for a publication please cite:

O. Tange (2011): GNU SQL - A Command Line Tool for Accessing Different
Databases Using DBURLs, ;login: The USENIX Magazine, April 2011:29-32.


= About GNU Niceload =

GNU niceload slows down a program when the computer load average (or
other system activity) is above a certain limit. When the limit is
reached the program will be suspended for some time. If the limit is a
soft limit the program will be allowed to run for short amounts of
time before being suspended again. If the limit is a hard limit the
program will only be allowed to run when the system is below the
limit.