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bug#19708: Bowtie fails to build
From: |
Ricardo Wurmus |
Subject: |
bug#19708: Bowtie fails to build |
Date: |
Wed, 28 Jan 2015 15:11:06 +0100 |
Andreas Enge writes:
> bowtie currently fails to build on all three architectures on hydra.
>
> On i686, the error message is:
> Makefile:146: *** bowtie2 compilation requires a 64-bit platform . Stop.
>
> Surprisingly, the same error message is shown on mip64el (!).
> From its description, I do not expect users to run the program on mips,
> so it might be the safest option to disable the build of these two
> architectures.
>
> On x86_64, the error message is
> g++: error: unrecognized command line option '-stdlib=libstdc++'
> See http://hydra.gnu.org/build/204787 .
This is odd. The Makefile only adds this option on MacOS:
MACOS = 0
ifneq (,$(findstring Darwin,$(shell uname)))
MACOS = 1
ifneq (,$(findstring 13,$(shell uname -r)))
CPP = clang++
CC = clang
EXTRA_FLAGS += -stdlib=libstdc++
endif
endif
Whether or not a platform is 64-bit is determined with uname. Both
these errors relate to using uname.
Is it not available at build time?
I can build the package just fine with:
guix build -S bowtie
...
guix enviroment --pure bowtie
make
~~ Ricardo