Hi
I cannot run bammds even the sample data.
When I do I keep getting this message
[mpileup] 1 samples in 2 input files
<mpileup> Set max per-file depth to 8000
Error in data.table::fread(asd_file, sep = "auto", sep2 = "auto", nrows = nrows, :
'skip' must be a length 1 vector of type numeric or integer >=0, or single character search string
Calls: all -> read_data_files -> as.data.frame -> <Anonymous>
Execution halted
I tried removing the skip from bammds_plot.r
But then received this message
Error in setcolorder(ans, reorder) :
neworder is length 0 but x has 1878 columns.
Calls: all ... read_data_files -> as.data.frame -> <Anonymous> -> setcolorder
Execution halted
Any help would be much appreciated. Thank you